Hi,
i discovered a small bug in obgrep. The -i parameter to specify the
input format is not used, because its overwritten e few lines below.
Please find attached a small patch to fix that.
Kind regards,
Bjoern
--
Björn Grüning
Albert-Ludwigs-Universität Freiburg
Institute of Pharmaceutical Sciences
Pharmaceutical Bioinformatics
Hermann-Herder-Strasse 9
D-79104 Freiburg i. Br.
Tel.: +49 761 203-4872
Fax.: +49 761 203-97769
E-Mail: bjoern.gruen...@pharmazie.uni-freiburg.de
Web: http://www.pharmaceutical-bioinformatics.org/
--- obgrep_ori.cpp 2012-07-10 15:16:05.593265874 +0200
+++ obgrep.cpp 2012-07-10 15:12:12.753906805 +0200
@@ -80,7 +80,7 @@
// the identifying file extension. This is a slight
// reduction in flexibility (which is not currently used)
pFormat = conv.FindFormat(iext);
-
+
if(pFormat==NULL)
{
cerr << program_name << ": cannot read input format!" << endl;
@@ -156,12 +156,14 @@
// Find Input filetype
- pFormat = conv.FormatFromExt(FileIn);
- if (pFormat == NULL)
- {
- cerr << program_name << ": cannot read input format!" << endl;
- return (-1);
- }
+ if (pFormat == NULL) {
+ pFormat = conv.FormatFromExt(FileIn);
+ if (pFormat == NULL)
+ {
+ cerr << program_name << ": cannot read input format!" << endl;
+ return (-1);
+ }
+ }
}
if (! conv.SetInAndOutFormats(pFormat, pFormat))
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