Bugs item #3556863, was opened at 2012-08-12 23:27
Message generated for change (Tracker Item Submitted) made by dn2010
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Category: Installation/Building
Group: 2.3.x
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: dn2010 (dn2010)
Assigned to: Nobody/Anonymous (nobody)
Summary: eigen2 + trunk or 2.3.1
Initial Comment:
error with building trunk on slackware 14rc1 (eigen2 2.0.10)
[ 0%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.o
cd /tmp/SBo/trunk/build/src && /usr/bin/c++ -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS
-DHAVE_LIBZ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -D__WXGTK__ -DHAVE_WXWIDGETS
-DHAVE_SHARED_POINTER -DHAVE_EIGEN -O2 -march=i486 -mtune=i686 -pthread -O3
-DNDEBUG -O2 -DNDEBUG -fPIC -isystem
/usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8
-I/tmp/SBo/trunk/build/include -I/tmp/SBo/trunk/data -I/tmp/SBo/trunk/include
-I/usr/include/eigen2 -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.3.2\"" -o
CMakeFiles/openbabel.dir/distgeom.o -c /tmp/SBo/trunk/src/distgeom.cpp
In file included from /tmp/SBo/trunk/src/distgeom.cpp:22:0:
/tmp/SBo/trunk/include/openbabel/distgeom.h:32:23: фатальная ошибка:
Eigen/Dense: Нет такого файла или каталога
компиляция прервана.
(cyrillic message is "fatal error: Eigen/Dense: no such file or directory
compilation aborted)
with building 2.3.1 on the same system:
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.o
cd /tmp/SBo/openbabel-2.3.1/build/src && /usr/bin/c++ -DMAKE_OBDLL
-DUSING_DYNAMIC_LIBS -DHAVE_LIBZ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES
-D__WXGTK__ -DHAVE_WXWIDGETS -DHAVE_EIGEN -O2 -march=i486 -mtune=i686 -pthread
-O3 -DNDEBUG -O2 -DNDEBUG -fPIC -isystem
/usr/lib/wx/include/gtk2-unicode-release-2.8 -isystem /usr/include/wx-2.8
-I/tmp/SBo/openbabel-2.3.1/build/include -I/tmp/SBo/openbabel-2.3.1/data
-I/tmp/SBo/openbabel-2.3.1/include -I/usr/include/eigen2
-DOB_MODULE_PATH="\"/usr/lib/openbabel/2.3.1\"" -o
CMakeFiles/openbabel.dir/math/align.o -c
/tmp/SBo/openbabel-2.3.1/src/math/align.cpp
In file included from /usr/include/eigen2/Eigen/Core:99:0,
from
/tmp/SBo/openbabel-2.3.1/include/openbabel/math/align.h:26,
from /tmp/SBo/openbabel-2.3.1/src/math/align.cpp:24:
/usr/include/eigen2/Eigen/src/Core/MathFunctions.h: In instantiation of «T
Eigen::ei_hypot(T, T) [with T = double]»:
/usr/include/eigen2/Eigen/src/SVD/SVD.h:331:42: required from «void
Eigen::SVD<MatrixType>::compute(const MatrixType&) [with MatrixType =
Eigen::Matrix<double, 3, 3>]»
/usr/include/eigen2/Eigen/src/SVD/SVD.h:71:7: required from
«Eigen::SVD<MatrixType>::SVD(const MatrixType&) [with MatrixType =
Eigen::Matrix<double, 3, 3>]»
/tmp/SBo/openbabel-2.3.1/src/math/align.cpp:149:38: required from here
/usr/include/eigen2/Eigen/src/Core/MathFunctions.h:40:18: ошибка: «ei_abs» was
not declared in this scope, and no declarations were found by
argument-dependent lookup at the point of instantiation [-fpermissive]
In file included from /usr/include/eigen2/Eigen/Core:99:0,
from
/tmp/SBo/openbabel-2.3.1/include/openbabel/math/align.h:26,
from /tmp/SBo/openbabel-2.3.1/src/math/align.cpp:24:
/usr/include/eigen2/Eigen/src/Core/MathFunctions.h:264:20: замечание: «long
double Eigen::ei_abs(long double)» declared here, later in the translation unit
In file included from /usr/include/eigen2/Eigen/Core:99:0,
from
/tmp/SBo/openbabel-2.3.1/include/openbabel/math/align.h:26,
from /tmp/SBo/openbabel-2.3.1/src/math/align.cpp:24:
/usr/include/eigen2/Eigen/src/Core/MathFunctions.h:41:18: ошибка: «ei_abs» was
not declared in this scope, and no declarations were found by
argument-dependent lookup at the point of instantiation [-fpermissive]
In file included from /usr/include/eigen2/Eigen/Core:99:0,
from
/tmp/SBo/openbabel-2.3.1/include/openbabel/math/align.h:26,
from /tmp/SBo/openbabel-2.3.1/src/math/align.cpp:24:
/usr/include/eigen2/Eigen/src/Core/MathFunctions.h:264:20: замечание: «long
double Eigen::ei_abs(long double)» declared here, later in the translation unit
In file included from /usr/include/eigen2/Eigen/Core:99:0,
from
/tmp/SBo/openbabel-2.3.1/include/openbabel/math/align.h:26,
from /tmp/SBo/openbabel-2.3.1/src/math/align.cpp:24:
/usr/include/eigen2/Eigen/src/Core/MathFunctions.h:45:34: ошибка: «ei_sqrt» was
not declared in this scope, and no declarations were found by
argument-dependent lookup at the point of instantiation [-fpermissive]
In file included from /usr/include/eigen2/Eigen/Core:99:0,
from
/tmp/SBo/openbabel-2.3.1/include/openbabel/math/align.h:26,
from /tmp/SBo/openbabel-2.3.1/src/math/align.cpp:24:
/usr/include/eigen2/Eigen/src/Core/MathFunctions.h:266:20: замечание: «long
double Eigen::ei_sqrt(long double)» declared here, later in the translation unit
make[2]: *** [src/CMakeFiles/openbabel.dir/math/align.o] Ошибка 1
make[2]: Выход из каталога `/tmp/SBo/openbabel-2.3.1/build'
make[1]: *** [src/CMakeFiles/openbabel.dir/all] Ошибка 2
make[1]: Выход из каталога `/tmp/SBo/openbabel-2.3.1/build'
make: *** [all] Ошибка 2
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