I can't reproduce the error: dkoes@nova:~/tmp$ babel -ig98 decane-g4.log -osdf koko.sdf 1 molecule converted 23 audit log messages
Is there any chance that the format plugins have not been updated? If you don't actually install your build, when you run babel it will likely pull in the system plugins instead of the newly built ones. David Koes Assistant Professor Computational and Systems Biology University of Pittsburgh On 07/15/2015 12:38 PM, openbabel-devel-requ...@lists.sourceforge.net wrote: > Message: 3 > Date: Mon, 13 Jul 2015 10:44:36 +0200 > From: David van der Spoel<sp...@xray.bmc.uu.se> > Subject: Re: [OpenBabel-Devel] git version of OB broken? > Cc: Openbabel-DEV<openbabel-devel@lists.sourceforge.net> > Message-ID:<55a37a74.2060...@xray.bmc.uu.se> > Content-Type: text/plain; charset=utf-8; format=flowed > > On 13/07/15 10:35, Noel O'Boyle wrote: >> >Can you provide a test case? > http://folding.bmc.uu.se/decane-g4.log.gz > >> > >> >On 12 July 2015 at 13:32, David van der Spoel<sp...@xray.bmc.uu.se> wrote: >>> >>Hi, >>> >> >>> >>I compiled a fresh OB clone but get SEGV on a number of programs, >>> >>including babel. >>> >>% babel -ig98 decane-g4.log -osdf koko.sdf >>> >>Segmentation fault >>> >> ------------------------------------------------------------------------------ Don't Limit Your Business. Reach for the Cloud. GigeNET's Cloud Solutions provide you with the tools and support that you need to offload your IT needs and focus on growing your business. Configured For All Businesses. Start Your Cloud Today. https://www.gigenetcloud.com/ _______________________________________________ OpenBabel-Devel mailing list OpenBabel-Devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-devel
