Okay, I think it's close to completion. Again, comments welcome...

https://gist.github.com/baoilleach/d9f02fb906e70277f6b4721d63d68b59

- Noel

On 25 April 2018 at 13:50, David Koes <dk...@pitt.edu> wrote:

> Missing description of OB_COMPARE (and other asserts?).  Is the idea of
> OB_REQUIRE that it should be used for checks that would indicate there is
> something wrong with the overall test harness because it will end _all_
> tests, not the current one?
>
> Could give one sentence description of run_exec (a helper function that
> passes the contents of its first argument as stdin to the commandline
> specified as the second argument).
>
> Definitely want to know how to add input/output files and properly
> reference them from all three test scenarios.
>
> David Koes
>
> Assistant Professor
> Computational & Systems Biology
> University of Pittsburgh
>
> On 04/25/2018 02:21 AM, Noel O'Boyle wrote:
>
>> (Sorry - previous email was sent by accident)
>>
>> On the topic of documentation, here's what I've got so far:
>> https://gist.github.com/baoilleach/d9f02fb906e70277f6b4721d63d68b59 <
>> https://na01.safelinks.protection.outlook.com/?url=https%
>> 3A%2F%2Fgist.github.com%2Fbaoilleach%2Fd9f02fb906e70277f6b47
>> 21d63d68b59&data=01%7C01%7Cdkoes%40pitt.edu%7Cf543c3eb2
>> 60b487ad9ad08d5aa74c860%7C9ef9f489e0a04eeb87cc3a526112fd0d%
>> 7C1&sdata=gBUFcMEX89RR%2FA95ZIh2w9wzBFTS2grmYxFA2uZMI4Q%3D&reserved=0>
>>
>> I still need to add descriptions of how to specify testfiles, and handle
>> exceptions. Apart from that, anything missing or could be explained better?
>>
>> - Noel
>>
>
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