Apologies that the headers aren't right on this; I'm not on the
mailing list (so please CC me on replies). Noel pointed me to the
discussion.

I added a vf2 implementation to the RDKit earlier this year. Here's
the announcement along with some benchmarking:
http://www.mail-archive.com/rdkit-disc...@lists.sourceforge.net/msg00589.html
Since that announcement the code has moved onto the trunk:
http://rdkit.svn.sourceforge.net/viewvc/rdkit/trunk/Code/GraphMol/Substruct/vf2.hpp?revision=1082&view=markup

I had been using the vflib implementation of the vf2 algorithm for
years, it was definitely functioning code, but being able to skip the
translation step to the vflib graph representation made a big
difference.

Best Regards,
-greg

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