After a new OpenBabel 2.2.3 reinstallation i have the same problem... ariste...@thema:/tmp/test_dir_2$ babel --gen3D -ismi prop.smi -osdf prop2.sdf
babel: cannot read input format! Open Babel 2.2.3 -- Mar 24 2010 -- 11:52:35 Usage: babel [-i<input-type>] <name> [-o<output-type>] <name> Try -H option for more information. El mié, 24-03-2010 a las 10:24 +0100, David García Aristegui escribió: > Same input file prop.smi (CCC), and in the examples of my user prop.smi > is owned by "aristegui" > > With root: > > r...@thema:/tmp/test_dir_1# babel --gen3D -ismi prop.smi -osdf prop.sdf > 1 molecule converted > 1 info messages 55 audit log messages 1 debugging messages > > and a proper prop.sdf with 3D coordinates is generated > > With my user: > > ariste...@thema:/tmp/test_dir_2$ /usr/bin/babel --gen3D -ismi prop.smi > -osdf prop.sdf > > babel: cannot read input format! > Open Babel 2.2.0 -- Jul 17 2008 -- 11:53:19 > Usage: babel [-i<input-type>] <name> [-o<output-type>] <name> > Try -H option for more information. > > ariste...@thema:/tmp/test_dir_2$ /usr/local/bin/babel --gen3D -ismi > prop.smi -osdf prop.sdf > > babel: cannot read input format! > Open Babel 2.2.3 -- Jan 18 2010 -- 13:11:01 > Usage: babel [-i<input-type>] <name> [-o<output-type>] <name> > Try -H option for more information. > > babel: cannot read input format! > Open Babel 2.2.0 -- Jul 17 2008 -- 11:53:19 > Usage: babel [-i<input-type>] <name> [-o<output-type>] <name> > Try -H option for more information. > > Thank you for your help!!! > > El mar, 23-03-2010 a las 20:39 +0100, Tim Vandermeersch escribió: > > On Tue, Mar 23, 2010 at 8:08 PM, David García Aristegui > > <ariste...@cbm.uam.es> wrote: > > > Hello, OB is installed on /usr/bin/babel /usr/local/bin/babel > > > The BABEL_LIBDIR is not set (for root or the others). > > > > Sorry for all the questions, but it's hard to guess what's wrong... > > > > Do you have two versions of OB installed? > > Does "/usr/bin/babel -H" produce the same results as > > "/usr/local/bin/babel -H"? > > Does /usr/local/bin versus /usr/bin have the same priority for user & > > root? (i.e. are they in the same order in PATH env. var.) > > > > > Best regards. > > > > > > El mar, 23-03-2010 a las 20:03 +0100, Tim Vandermeersch escribió: > > >> Hi, > > >> > > >> On Tue, Mar 23, 2010 at 7:29 PM, David García Aristegui > > >> <ariste...@cbm.uam.es> wrote: > > >> > Hello, i have a strange problem with non-root users and > > OpenBabel, > > >> and > > >> > tested with two different versions of the program: > > >> > > > >> > Open Babel 2.2.3 -- Jan 18 2010 > > >> > Open Babel 2.2.0 -- Jul 17 2008 > > >> > > > >> > OB is installed in a PC with Ubuntu 8x (Hardy Neron) > > >> > Linux 2.6.27-14-server (the root account is activated). > > >> > > > >> > My problem: with non-root users i always retrieve an > > >> > "babel: cannot read input format!" error, even if the file is > > owned > > >> by > > >> > this user. > > >> > > > >> > The users can do a babel -V, but not to perform conversions... > > any > > >> > ideas, please? with root user OB works like a charm. > > >> > > >> Does the root user or normal user have the BABEL_LIBDIR environment > > >> variable set? Did you use some special install prefix (other than > > >> /usr/local)? > > >> > > >> > Thank you in advanced!!! best regards > > >> > > > >> > > > >> > > > >> > > > >> > > > >> > > ------------------------------------------------------------------------------ > > >> > Download Intel® Parallel Studio Eval > > >> > Try the new software tools for yourself. Speed compiling, find > > bugs > > >> > proactively, and fine-tune applications for parallel performance. > > >> > See why Intel Parallel Studio got high marks during beta. > > >> > http://p.sf.net/sfu/intel-sw-dev > > >> > _______________________________________________ > > >> > OpenBabel-discuss mailing list > > >> > OpenBabel-discuss@lists.sourceforge.net > > >> > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss > > >> > > > >> > > > > > > > > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
