On 3/24/11 9:39 AM, Douglas Houston wrote: > I must be missing something really obvious. I tried the -h option but > there are no hydrogens in the output. > > This is the command I'm using: > > babel -ipdb hydroxymate.pdb -osmi -h > > The help page says: > Write Options e.g. -xt > h Output explicit hydrogens as such > > How else do you use the h option?
The documentation is confusing on this point. All of the options for specific formats have to be preceeded by -x. In this case, that means the "h" option is written "-xh". Options like "-h" are for the babel program itself, options starting with "-x" are forwarded to the format modules. Craig ------------------------------------------------------------------------------ Enable your software for Intel(R) Active Management Technology to meet the growing manageability and security demands of your customers. Businesses are taking advantage of Intel(R) vPro (TM) technology - will your software be a part of the solution? Download the Intel(R) Manageability Checker today! http://p.sf.net/sfu/intel-dev2devmar _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
