On 12/04/2011 20:00, carlos ortega wrote: > Greetings, > > I used the line > > babel *.sdf .mol2 -m > > But, does not work. > > It put one file mol2 and the name is the same for the file SDF.
Sorry, I misunderstood what you were doing. Use babel mymultifile.sdf out.mol2 -m which will produce a mol2 file for every molecule in the sdf file, starting with out1.mol2, out2.mol2 ... Chris > > I use red hat 5.3 and i download the DAG packages for Red Hat Linux el5 > x86_64, > openbabel-2.1.1-1.el5.rf.x86_64.rpmHere > http://rpmfind.net/linux/rpm2html/search.php?query=openbabel&submit=Search+... > > Can you help me? > > Thank you! > > > Carlos Alberto Ortega Zuñiga > > > > > > > ________________________________ > From: Chris Morley<c.mor...@gaseq.co.uk> > To: openbabel-discuss@lists.sourceforge.net > Sent: Tue, April 12, 2011 2:50:09 PM > Subject: Re: [Open Babel] info about how convert from SDF multifile to mol2 > > On 12/04/2011 17:58, carlos ortega wrote: >> Greetings, >> I try to use babel to convert a multifile SDF to several files MOL2, >> >> I use this line: >> >> babel -isdf *.sdf -omol2 *.mol2 -m >> >> But the conversion put other name for the giles MOL2, and the file SDF has >> the >> name for each file MOL2. >> >> How I do to put the name? >> My file SDF has a lot of files, one million or more. > > If you are using Windows > babel *.sdf *.mol2 > would convert each sdf file to a mol2 file with the same name. > > With Linux, the shell replaces the second * character and you have to > use instead > babel *.sdf .mol2 -m > > The newer, slightly different obabel interface is now recommended, so > that the last command becomes > obabel *.sdf -O .mol2 -m > > Chris > > ------------------------------------------------------------------------------ > Forrester Wave Report - Recovery time is now measured in hours and minutes > not days. Key insights are discussed in the 2010 Forrester Wave Report as > part of an in-depth evaluation of disaster recovery service providers. > Forrester found the best-in-class provider in terms of services and vision. > Read this report now! http://p.sf.net/sfu/ibm-webcastpromo > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss > ------------------------------------------------------------------------------ Forrester Wave Report - Recovery time is now measured in hours and minutes not days. Key insights are discussed in the 2010 Forrester Wave Report as part of an in-depth evaluation of disaster recovery service providers. Forrester found the best-in-class provider in terms of services and vision. Read this report now! http://p.sf.net/sfu/ibm-webcastpromo _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
