The problem is simply due to array out-of-bounds. There's a simple fix (resizing a vector dynamically, rather than hardcoding the size), and I'll check it in once I've tested it.
- Noel On 30 September 2011 20:15, Geoffrey Hutchison <ge...@geoffhutchison.net> wrote: >> Indeed >> babel svgError.sdf svgError.svg >> --> Segmentation fault > > Strangely, I don't get a segfault, but I do get a hang: > #2 0x00000001001434df in OpenBabel::TSimpleMolecule::getBond > (this=0x1041f8000, index=61) at mcdlutil.cpp:1618 > #3 0x0000000100161312 in OpenBabel::TSimpleMolecule::bondsOverlapped > (this=0x1041f8000, bN1=56, bN2=61, delta=0.22959804535802722) at > mcdlutil.cpp:3034 > #4 0x00000001001616b3 in OpenBabel::TSimpleMolecule::hasOverlapped > (this=0x1041f8000, delta=0.22959804535802722, findFirst=false) at > mcdlutil.cpp:3056 > #5 0x0000000100164bc8 in OpenBabel::TSimpleMolecule::correctOverlapped > (this=0x1041f8000) at mcdlutil.cpp:3470 > #6 0x0000000100191bf3 in OpenBabel::TemplateRedraw::redrawFine > (this=0x7fff5fbd3ca8, smIn=@0x7fff5fbd3cb8) at mcdlutil.cpp:5968 > > -Geoff > ------------------------------------------------------------------------------ > All of the data generated in your IT infrastructure is seriously valuable. > Why? It contains a definitive record of application performance, security > threats, fraudulent activity, and more. Splunk takes this data and makes > sense of it. IT sense. And common sense. > http://p.sf.net/sfu/splunk-d2dcopy2 > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss > ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity and more. Splunk takes this data and makes sense of it. Business sense. IT sense. Common sense. http://p.sf.net/sfu/splunk-d2dcopy1 _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
