Good morning,

I am writing in regards to OBDotNet and the whole OpenBabel family tools.

 

First of all, I am not a computer programmer, but since I can’t find any
help around (and couldn’t find any clear answers on the web), I am taking
the chance to writing to you. I have a master degree in chemistry and
working and found myself climbing up the ladder at work by providing new
informatics tools to the whole company. I developed several databases and
doing my best to help the chemists but more importantly to use the various
chemical information through the whole business. I started by developing MS
Access database; then splitted them in front and back end; I then moved my
back end databases to SQL and recently to move my Access front end to aspx
(C#) forms. So far, I’m pretty proud of myself but there is still some tools
that would like to implement and if I could, I’m sure I could provide much
more useful tools to our company.

 

So far, I was using ChemDraw to draw molecule and paste them in my SQL
database. Works OK, but you’ll agree that it is very limited since I’m using
OLE objects and databases end up pretty bulky. With my aspx (C#) forms, and
with the help of Peter Ertl from Novartis, was able to put his Java
Molecular Editor to my forms and then save JME Strings and SMILES to my
databases.  However, and that is where I need help, I would like to find a
way to write data such as Molecular Formula and Molecular Weight
automatically when the chemists draw their molecules. Moreover, I would
sometimes need to convert data to other formats (such as MOL, Unique SMILES,
and more). For all that, I’m pretty sure that OpenBabel is the tool of
choice. I tried to use all your documentation available on the web but I
believe that I can’t go further without help. I was able to install OBDotNet
and run your Example.cs file (and then Example.exe file) on Dos prompt by
following http://openbabel.org/docs/dev/UseTheLibrary/CSharp.html 

 

I am coding my aspx (C#) pages with Microsoft Visual Web Developer 2008
Express Edition and running on Windows XP. Is it possible to implement
OBDotNet functions within my pages ? How can I do that ?

 

Thank you

 

David Gauthier

P.S.: I know that explaining how to code, how to compile, how to add
references, and so on, to a non-programmer could be a pain but I would
really appreciate a little push forward. I’ve always tried to learn by
myself, bring innovative ideas and I’ve always been fairly good with
computers. Thanks again.

 

 

David Gauthier, M.Sc., MBA

Organizational Systems / Systèmes organisationnels

E-mail:  <mailto:davidgauth...@omegachem.com> davidgauth...@omegachem.com 

 


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