Dear Noel, thanks for the tip, this fixed it indeed.
Cheers. Peter On 12/15/2011 09:00 AM, Douglas Houston wrote: > Thankyou Peter and Noel, I was having the exact same problem. > > > Quoting Peter Schmidtke <pschmid...@mmb.pcb.ub.es> on Thu, 15 Dec 2011 > 08:12:11 +0100: > >> Ah ok, I'll try that then. >> >> Thanks. >> >> Peter >> >> On Wed, 14 Dec 2011 23:50:58 +0100, "Noel O'Boyle" >> <baoille...@gmail.com> >> wrote: >>> I'm sure it's fine. If you really want "make test" to work, you should >>> set LD_LIIBRARY_PATH and/or BABEL_LIBDIR to point to the build/lib >>> folder. >>> >>> - Noel >>> >>> On 14 December 2011 21:50, Peter Schmidtke <pschmid...@mmb.pcb.ub.es> >>> wrote: >>>> Dear OpenBabel community, >>>> >>>> I'm trying to install openbabel (version 2.3.1) on a Centos 5.5 64bit >>>> machine with perl bindings. >>>> >>>> I manage to compile with cmake and install with make install...but >>>> running make test yields tons of errors like segfaults, double free or >>>> corruption etc...and I don't understand why. The obabel standalone >>>> works, the perl bindings don't seem to work. >>>> >>>> How can check what is wrong? Somebody had similar issues on such a >>>> system? >>>> >>>> Attached here only the beginning of the log of make test. >>>> >>>> >>>> Thanks in advance for every help- >>>> >>>> Peter Schmidtke >>>> >>>> >>>> Test project /usr/local/openbabel-2.3.1/build >>>> 1/ 58 Testing align_Test ***Exception: >>>> SegFault >>>> 2/ 58 Testing automorphism_Test *** glibc detected >>>> *** >>>> /usr/local/openbabel-2.3.1/build/bin/test_automorphism: double free or >>>> corruption (!prev): 0x00000000158ff800 *** >>>> ======= Backtrace: ========= >>>> /lib64/libc.so.6[0x33da07230f] >>>> /lib64/libc.so.6(cfree+0x4b)[0x33da07276b] >>>> >> /usr/local/lib/libopenbabel.so.4(_ZN9OpenBabel14OBElementTableD1Ev+0x4a)[0x2b56f1059c5a] >> >>>> /lib64/libc.so.6(__cxa_finalize+0x8e)[0x33da03368e] >>>> /usr/local/lib/libopenbabel.so.4[0x2b56f1020cd6] >>>> >>>> >>>> >>>> >> ------------------------------------------------------------------------------ >> >>>> Cloud Computing - Latest Buzzword or a Glimpse of the Future? >>>> This paper surveys cloud computing today: What are the benefits? >>>> Why are businesses embracing it? What are its payoffs and pitfalls? >>>> http://www.accelacomm.com/jaw/sdnl/114/51425149/ >>>> _______________________________________________ >>>> OpenBabel-discuss mailing list >>>> OpenBabel-discuss@lists.sourceforge.net >>>> https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >> >> -- >> >> Peter Schmidtke >> >> ---------------------- >> PhD Student at the Molecular Modeling and Bioinformatics Group >> Dep. Physical Chemistry >> Faculty of Pharmacy >> University of Barcelona >> >> >> ------------------------------------------------------------------------------ >> >> 10 Tips for Better Server Consolidation >> Server virtualization is being driven by many needs. >> But none more important than the need to reduce IT complexity >> while improving strategic productivity. Learn More! >> http://www.accelacomm.com/jaw/sdnl/114/51507609/ >> _______________________________________________ >> OpenBabel-discuss mailing list >> OpenBabel-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >> > > > > > _____________________________________________________ > Dr. Douglas R. Houston > Lecturer > Room 3.23 > Institute of Structural and Molecular Biology > Michael Swann Building > King's Buildings > University of Edinburgh > Edinburgh, EH9 3JR, UK > Tel. 0131 650 7358 > ------------------------------------------------------------------------------ 10 Tips for Better Server Consolidation Server virtualization is being driven by many needs. But none more important than the need to reduce IT complexity while improving strategic productivity. Learn More! http://www.accelacomm.com/jaw/sdnl/114/51507609/ _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
