Hi there OpenBabel, I have mass tested the obabel 2.3.1 depiction code, and all looks awesome with the exception of:
obabel -:"c1cn2cc(CC(=O)NCC(NCC([O-])=O)=O)nc2s1" -O test.svg Any idea why this innocuous looking molecule produces no co-ordinates in the svg file? <rect x="0%" y="0%" width="100%" height="100%" stroke-width="0" fill="rgb(255,255,255)" /> <line x1="-nan" y1="-nan" x2="-nan" y2="-nan" stroke="rgb(0,0,0)" stroke-width="1.0"/> <line x1="-nan" y1="-nan" x2="-nan" y2="-nan" stroke="rgb(0,0,0)" stroke-width="1.0"/> <line x1="-nan" y1="-nan" x2="-nan" y2="-nan" stroke="rgb(0,0,0)" stroke-width="1.0"/> <line x1="-nan" y1="-nan" x2="-nan" y2="-nan" stroke="rgb(0,0,0)" stroke-width="1.0"/> <line x1="-nan" y1="-nan" x2="-nan" y2="-nan" stroke="rgb(0,0,0)" stroke-width="1.0"/> <line x1="-nan" y1="-nan" x2="-nan" y2="-nan" stroke="rgb(0,0,0)" stroke-width="1.0"/> [...snip...] Note that this molecule loads well in a number of other tools (marvin, moe, rdkit etc). Many Thanks, - Jean-Paul Ebejer Early Stage Researcher ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
