Have you tried "copy" output format?
-ocopy
----
Pozdrawiam, | Best regards,
Maciek Wójcikowski
[email protected]
2012/10/4 Juliette Pradon <[email protected]>
> Hello,
>
> I am using OpenBabel to split a multimol2 file into separate mol2 files
> (i.e. one mol2 file per compound). I use the following command:
>
> babel my_ligands.mol2 ligandPart.mol2 -m
>
> such that each single ligand mol2 file will be called ligandPart1.mol2,
> ligandPart2.mol2, etc
>
> The issue is that for some compounds, I have noticed that some bond types
> have been changed in the process, particularly aromatic bonds appearing
> where there should not be any.
>
> Is there another option to add to the command above that would tell
> OpenBabel not to modify the bond types?
>
> Thank you in advance for any help!
>
> Juliette
>
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