Sure thing! Is the code sufficient, or would you need a runnable jar?
package TestClasses; import org.openbabel.OBConversion; import org.openbabel.OBMol; public class TestOBWriteFile { public static void main(String[] args) { System.load("/Applications/OpenBabel/openbabel-2.2.3/scripts/java/libopenbabel.jnilib"); OBMol mol=new OBMol(); OBConversion obc=new OBConversion(); boolean SetSuccessful=obc.SetInAndOutFormats("pdb", "pdb"); if (SetSuccessful) { obc.ReadFile(mol, "/Users/max/propane.pdb"); obc.WriteFile(mol, "/Users/max/propaneOut.pdb"); } } } Thank you so much for your help! Best, Max -- View this message in context: http://forums.openbabel.org/Invalid-memory-access-during-OBConversion-WriteFile-tp4655729p4655739.html Sent from the General discussion mailing list archive at Nabble.com. ------------------------------------------------------------------------------ LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial Remotely access PCs and mobile devices and provide instant support Improve your efficiency, and focus on delivering more value-add services Discover what IT Professionals Know. Rescue delivers http://p.sf.net/sfu/logmein_12329d2d _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss