Dear all,
Will not help, but the conversion is fine with Open Babel 2.3.1, using
obabel or babel.
I should install 2.3.2... (the 2.3.2 release is not in the news box, by the
way).
Regards,
Pascal
2012/12/6 Manuel Melle Franco <[email protected]>
> Dear all,
>
> First thank you for your software and your effort, obabel is great!!!
>
> I just compiled the latest version of openbabel (2.3.2) in my ubuntu box
> and I get a segmentation fault when I try to read some molecules with N in
> mol2 format.
> It works fine for other formats but breaks with that.
>
> The output of gdb is:
>
> *Starting program: /usr/local/bin/babel mini2.mol2 mini2.xyz
>
> Program received signal SIGSEGV, Segmentation fault.
> 0x00002aaab040ab8a in OpenBabel::MOL2Format::ReadMolecule (this=<optimized
> out>, pOb=<optimized out>, pConv=<optimized out>)
> at
> /home/manu/bin/openbabel/openbabel-2.3.2/src/formats/mol2format.cpp:372
> 372 n_h_bonded++;
>
> *Find attached the file that gives trouble.
>
> thank you for your help, regards
>
> Manuel
>
> ____________________________________________________________
>
> Mohandas K. Gandhi often changed his mind publicly. An aide once asked
> him how he could so freely contradict this week what he had said just
> last week. The great man replied that it was because this week he knew
> better.
>
> ____________________________________________________________
>
> Manuel Melle-Franco, Ph.D.
> Investigador Auxiliar
> Centro de Ciências e Tecnologias de Computação, CCTC
> Universidade do Minho
> phone 00351-253604459
> Campus de Gualtar
> 4710-057 Braga
> PORTUGAL
> http://cctc.uminho.pt/portal_memberdata/manu
> http://www.researcherid.com/rid/D-3633-2011
> ---------------------------------------------------------
>
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> uses it.
> Rabindranath Tagore
>
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