[root@localhost bab-demo]# obprop tmp.mol 

name             93803-96-4.mol

formula          C16H10N3NaO8S

mol_weight       427.321

exact_mass       427.009

canonical_SMILES
[O-][N+](=O)c1cc(cc(c1O)/N=N/c1ccc2c(c1O)cccc2O)S(=O)(=O)[O-].[Na+]
93803-96-4.mol

 

==============================

*** Open Babel Warning  in InChI code

  93803-96-4.mol :Charges were rearranged; Proton(s) added/removed

InChI
InChI=1S/C16H11N3O8S.Na/c20-14-3-1-2-10-9(14)4-5-11(15(10)21)17-18-12-6-8(28
(25,26)27)7-13(16(12)22)19(23)24;/h1-7,20-22H,(H,25,26,27);/q;+1/p-1/b18-17+
;

 

num_atoms        39

num_bonds        40

num_residues     0

sequence         -

num_rings        3

logP             4.7883

PSA              196.81

MR               97.4644

$$$$

 

Why is there this error

==============================

*** Open Babel Warning  in InChI code

  93803-96-4.mol :Charges were rearranged; Proton(s) added/removed

 

 

 

Environment:

centos6.3,openbabel-2.3.2

 

 

The contents of the file tmp.mol 

 

93803-96-4.mol

  CheckMol                        TMF02:r0:m0

 

 29 30  0  4  0               999 V2000

   -3.9188    2.1434    0.0000 Na  0  0  0  0  0  0  0  0  0  0  0  0

   -2.2687    0.7145    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

   -1.4437    0.7145    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

   -1.0313   -0.0000    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

   -1.4437   -0.7145    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

   -2.2687   -0.7145    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

   -2.6813    0.0000    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

   -2.6813    1.4289    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0

   -1.9668    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0

   -3.3957    1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0

   -3.0938    2.1434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0

   -2.6812   -1.4289    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0

   -3.5062   -1.4289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0

   -2.2687   -2.1434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0

   -1.0313   -1.4289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0

   -0.2062   -0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0

    0.2062   -0.7145    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0

    1.4437   -1.4289    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

    1.0313   -0.7145    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

    1.4438    0.0000    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

    2.2687    0.0000    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

    2.6812   -0.7145    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

    3.5062   -0.7145    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

    3.9187   -1.4289    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

    3.5062   -2.1434    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

    2.6812   -2.1434    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

    2.2687   -1.4289    0.0000 C   0 00  0  0  0  0  0  0  0  0  0  0

    3.9188    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0

    1.0313   -2.1434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0

  2  3 01  0  1  0  0

  3  4 02  0  1  0  0

  4  5 01  0  1  0  0

  5  6 02  0  1  0  0

  6  7 01  0  1  0  0

  2  7 02  0  1  0  0

  8  9  2  0  0  0  0

  8 10  2  0  0  0  0

  8 11  1  0  0  0  0

  2  8  1  0  0  0  0

 12 13  2  0  0  0  0

 12 14  1  0  0  0  0

  6 12  1  0  0  0  0

  5 15  1  0  0  0  0

 16 17  2  0  0  0  0

 18 19 01  0  1  0  0

 19 20 02  0  1  0  0

 20 21 01  0  1  0  0

 21 22 02  0  1  0  0

 22 23 01  0  1  0  0

 23 24 02  0  1  0  0

 24 25 01  0  1  0  0

 25 26 02  0  1  0  0

 26 27 01  0  1  0  0

 18 27 02  0  1  0  0

 22 27 01  0  2  0  0

 23 28  1  0  0  0  0

 18 29  1  0  0  0  0

 17 19  1  0  0  0  0

  4 16  1  0  0  0  0

M  CHG  1   1   1

M  CHG  1  11  -1

M  CHG  1  12   1

M  CHG  1  14  -1

M  END

 

 

------------------------------------------------------------------------------
Learn Graph Databases - Download FREE O'Reilly Book
"Graph Databases" is the definitive new guide to graph databases and 
their applications. This 200-page book is written by three acclaimed 
leaders in the field. The early access version is available now. 
Download your free book today! http://p.sf.net/sfu/neotech_d2d_may
_______________________________________________
OpenBabel-discuss mailing list
OpenBabel-discuss@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/openbabel-discuss

Reply via email to