It can find all of the Python stuff okay, it just has a problem loading the C++ library. Does 'obabel' work okay?
I'm guessing you're on Linux. If so, it's LD_LIBRARY_PATH not DYLD_LIBRARY_PATH. I'm not sure but I don't think it'll work with quotation marks. BTW, I can't help notice you are doing all this as super-user. That's not a good idea as your file permissions will be messed up and cause problems in all sorts of ways. You should just set up and use "sudo". And it's usual to edit the per-user ~/.profile rather than /etc/profile. - Noel On 16 October 2013 17:22, Michał Kadlof <rami...@gmail.com> wrote: > I do have a problem with pybel while importing. Here are listings. I suspect > that I have messed up with PATH's, but I can't figure out what's wrong. > > # make test > (...) > Start 59: pybindtest__pybel > 59/60 Test #59: pybindtest__pybel ................***Failed Error regular > expression found in output. Regex=[FAIL] 0.81 sec > (...) > 98% tests passed, 1 tests failed out of 60 > > Total Test time (real) = 102.74 sec > > The following tests FAILED: > 59 - pybindtest__pybel (Failed) > Errors while running CTest > make: *** [test] Błąd 8 > > # python > Python 2.7.4 (default, Sep 26 2013, 03:20:56) > [GCC 4.7.3] on linux2 > Type "help", "copyright", "credits" or "license" for more information. >>>> import pybel > Traceback (most recent call last): > File "<stdin>", line 1, in <module> > File "/usr/local/lib/pybel.py", line 69, in <module> > informats = _formatstodict(_obconv.GetSupportedInputFormat()) > File "/usr/local/lib/pybel.py", line 65, in _formatstodict > broken = [(x,y.strip()) for x,y in broken] > ValueError: need more than 1 value to unpack >>>> import sys >>>> print sys.path > ['', > '/usr/local/lib/python2.7/dist-packages/biopython-1.61-py2.7-linux-i686.egg', > '/usr/local/src/openbabel-2.3.2/build', '/usr/local/lib', > '/usr/local/lib/python', '/usr/lib/python2.7', > '/usr/lib/python2.7/plat-i386-linux-gnu', '/usr/lib/python2.7/lib-tk', > '/usr/lib/python2.7/lib-old', '/usr/lib/python2.7/lib-dynload', > '/usr/local/lib/python2.7/dist-packages', > '/usr/lib/python2.7/dist-packages', > '/usr/lib/python2.7/dist-packages/PILcompat', > '/usr/lib/python2.7/dist-packages/gtk-2.0', > '/usr/lib/python2.7/dist-packages/ubuntu-sso-client'] > > # whereis pybel > pybel: /usr/local/lib/pybel.py /usr/local/lib/pybel.pyc > > # whereis openbabel > openbabel: /usr/local/lib/openbabel.pyc /usr/local/lib/openbabel.py > /usr/local/lib/openbabel /usr/local/openbabel > > # cat /etc/profile > (...) > export PYTHONPATH=.:/usr/local/lib:/usr/local/lib/python > export PATH="$PATH:/usr/local" > export BABEL_DATADIR="/usr/local/openbabel/share/openbabel/2.3.1" > export BABEL_LIBDIR="/usr/local/openbabel/lib/openbabel/2.3.1" > export BABEL_INCLUDEDIR="/usr/local/openbabel/include/openbabel-2.0" > export DYLD_LIBRARY_PATH="$DYLD_LIBRARY_PATH:/usr/local/openbabel/lib" > > > -- > Michael > > > ------------------------------------------------------------------------------ > October Webinars: Code for Performance > Free Intel webinars can help you accelerate application performance. > Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most > from > the latest Intel processors and coprocessors. See abstracts and register > > http://pubads.g.doubleclick.net/gampad/clk?id=60135031&iu=/4140/ostg.clktrk > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss > ------------------------------------------------------------------------------ October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60135031&iu=/4140/ostg.clktrk _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
