Any interest in resurrecting the automated Mac build for the dashboard? - Noel
On 1 January 2014 19:42, Geoffrey Hutchison <geoff.hutchi...@gmail.com> wrote: > I just tried to run the github pybel through Python3 on my Mac and got a > UnicodeDecodeError in _getpluginnames. To fix, I replaced > > > Aha. Thanks, I've seen the same problem on my MacBook, but didn't really > track down the bug. It lead to un-reproducible errors when I was running a > few scripts, but 50% of the time, things would run OK. I should know better > than to leave such bugs. :-) > > return [x.split()[0] for x in plugins] > > where the range(len()) mess is to avoid an implicit > openbabel.vectorString.__iter__ call, which errors. Printing out the items > in this list show that there are two indecipherable garbage lines, which is > really bizarre to me. > > > I think there's a bug somewhere in the underlying C++. For example, if I run > "obabel -L descriptors" I get the strange garbage (irreproducible): > > MACCS.txt > > ?? > ?? ? > ?? > bonds /?? > > > The rest of the output is fine. > > As far as I can tell, the other plugin types are fine. Another time listing > the descriptors, I get: > > tbonds Number ?q > title For comparing a molecule's title > TPSA topological polar surface area > ?PK? > > > So there's clearly some error in the descriptors, either the plugin > definitions or the loader itself. I suspect if we can track down *that* bug, > the Python will be OK. > > -Geoff ------------------------------------------------------------------------------ Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831&iu=/4140/ostg.clktrk _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
