Hello!
I have been trying to compile openbabel to work with the popular "anaconda"
python distribution on my Mac OS X Maverik unsuccessfully. Investigation
of the generated "_openbabel.so" file with otool indicates that the default
libpython2.7.dylib is being used in the compiling process instead of the
one I specified ( http://pastebin.com/raw.php?i=caHBAnLE ).
This is the cmake command I am using:
cmake -DBUILD_GUI=OFF -DPYTHON_BINDINGS=ON
-DPYTHON_LIBRARY=/Users/owner/anaconda/lib/libpython2.7.dylib
-DPYTHON_INCLUDE_DIR=/Users/owner/anaconda/include/python2.7
"-DCMAKE_OSX_SYSROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.8.sdk"
"-DCMAKE_OSX_DEPLOYMENT_TARGET=10.8" ~/openbabel-2.3.2
Any ideas on how to get the installation to respect my specified .dylib
file? Unfortunately, with the current configuration, trying to import
pybel within the anaconda environment gives me this error:
Fatal Python error: PyThreadState_Get: no current thread
aborted
Any help would be more than appreciated.
Thank you,
Trevor
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