I'm trying to get the latest version of OB (https://github.com/openbabel/openbabel) to compile on my 64 bit Linux system. I had no issue getting it getting it install on OSX 10.9 test environment.
Compiler is gcc (GCC) 4.6.3 20120306 (Red Hat 4.6.3-2) Below is a copy of the cmake output -- The C compiler identification is GNU 4.6.3 -- The CXX compiler identification is GNU 4.4.6 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Using included inchi library. -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.1") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") -- Could NOT find wxWidgets (missing: wxWidgets_FOUND) -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR EIGEN2_VERSION_OK) (Required is at least version "2.0.0") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1") -- checking for module 'cairo' -- found cairo, version 1.8.8 -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets not found => GUI will not be built -- Found PythonInterp: /usr/bin/python (found version "2.6.8") -- Configuring done -- Generating done -- Build files have been written to: /usr/src/build and finally make output right before it dies: [ 27%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/._ichisort.o cd /usr/src/build/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -O2 -g -DNDEBUG -fPIC -I/usr/src/build/include -I/usr/src/openbabel-master/data -I/usr/src/openbabel-master/include -I/usr/include/cairo -I/usr/src/openbabel-master/include/inchi -DOB_MODULE_PATH="\"/usr/local/lib/openbabel/2.3.90\"" -o CMakeFiles/inchi.dir/._ichisort.o -c /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:1: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:2: error: stray ‘\5’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:2: error: stray ‘\26’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:2: error: stray ‘\7’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:5: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:2: error: stray ‘\2’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:7: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:9: error: unknown type name ‘Mac’ /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:16: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘X’ /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:17: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:16: error: stray ‘\2’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:27: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:35: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:16: error: stray ‘\177’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:39: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:16: error: stray ‘\2’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:43: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:16: error: stray ‘\261’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:47: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:89: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:16: error: stray ‘\261’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:97: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:16: error: stray ‘\230’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:101: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:16: error: stray ‘\31’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:105: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:16: error: stray ‘\1’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:121: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:16: error: stray ‘\230’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:125: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:16: error: stray ‘\31’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:129: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:16: error: stray ‘\25’ in program /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:152: warning: null character(s) ignored [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:160: error: expected identifier or ‘(’ before numeric constant /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:169: warning: data definition has no type or storage class [enabled by default] /usr/src/openbabel-master/src/formats/libinchi/._ichisort.c:1:177: warning: null character(s) ignored [enabled by default] make[2]: *** [src/formats/libinchi/CMakeFiles/inchi.dir/._ichisort.o] Error 1 make[2]: Leaving directory `/usr/src/build' make[1]: *** [src/formats/libinchi/CMakeFiles/inchi.dir/all] Error 2 Thanks in advance for any help -- View this message in context: http://forums.openbabel.org/Make-error-Linux-64-bit-GCC-4-6-3-inchi-dir-all-tp4657321.html Sent from the General discussion mailing list archive at Nabble.com. ------------------------------------------------------------------------------ Learn Graph Databases - Download FREE O'Reilly Book "Graph Databases" is the definitive new guide to graph databases and their applications. 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