> The operations are aimed at use from the command-line and so I would
> recommend using Python's subprocess.
Well, I think you can employ them in Python directly. This is untested, but
something like this would work:
>> confab = openbabel.OBOp.FindType("confab")
>> confab.Do(myOBMol, "options")
where "options" is a space-delimited set of options.
Looking at the code, it seems like none of the Op classes actually parse the
option text, which seems like a bug (i.e., a never-implemented feature).
As Noel said, the src/ops/opconfab.cpp code is more-or-less command-line driven
and using the subprocess support seems to be the best current approach.
-Geoff
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