32-bit vs 64-bit. See similar question on mailing list last week or so. On 10 June 2015 at 02:04, michael tro <mtr...@gmail.com> wrote: > Hello all, > I was trying to install the python bindings. I have installed the gui and > when testing the installation every thing was going as expected in the > windows command line, but once I opened python and tried to import pybel it > could not find the module pybel. I installed the pybel for python 3.3 and I > am using python 3.4 which I installed with anaconda so this may be the > problem, however if you know a way to fix this I would greatly appreciate > any help. I have pasted the command line text bellow. > Thanks, > Michael > > Microsoft Windows [Version 6.3.9600] > (c) 2013 Microsoft Corporation. All rights reserved. > > C:\Users\Michael>obabel -V > Open Babel 2.3.2 -- Oct 5 2012 -- 10:00:48 > > C:\Users\Michael>obabel -Hsdf > sdf MDL MOL format > Reads and writes V2000 and V3000 versions > > Open Babel supports an extension to the MOL file standard > that allows cis/trans and tetrahedral stereochemistry to be > stored in 0D MOL files. The tetrahedral stereochemistry is > stored as the atom parity, while the cis/trans stereochemistry > is stored using Up and Down bonds similar to how it is > represented in a SMILES string. Use the ``S`` option > when reading or writing if you want to avoid storing > or interpreting stereochemistry in 0D MOL files. > > Read Options, e.g. -as > s determine chirality from atom parity flags > The default setting for 2D and 3D is to ignore atom parity and > work out the chirality based on the bond > stereochemistry (2D) or coordinates (3D). > For 0D the default is already to determine the chirality > from the atom parity. > S do not read stereochemistry from 0D MOL files > Open Babel supports reading and writing cis/trans > and tetrahedral stereochemistry to 0D MOL files. > This is an extension to the standard which you can > turn off using this option. > T read title only > P read title and properties only > When filtering an sdf file on title or properties > only, avoid lengthy chemical interpretation by > using the ``T`` or ``P`` option together with the > :ref:`copy format <Copy_raw_text>`. > > Write Options, e.g. -x3 > 3 output V3000 not V2000 (used for >999 atoms/bonds) > m write no properties > w use wedge and hash bonds from input (2D only) > S do not store cis/trans stereochemistry in 0D MOL files > A output in Alias form, e.g. Ph, if present > > > Specification at: http://www.mdl.com/downloads/public/ctfile/ctfile.jsp > > C:\Users\Michael>dir "%BABEL_DATADIR%"\mr.txt > Volume in drive C is Windows8_OS > Volume Serial Number is 60ED-D981 > > Directory of C:\Users\Michael\AppData\Roaming\OpenBabel-2.3.2\data > > 10/03/2012 02:50 AM 4,295 mr.txt > 1 File(s) 4,295 bytes > 0 Dir(s) 329,470,558,208 bytes free > > C:\Users\Michael>python > Python 3.4.1 |Anaconda 2.1.0 (64-bit)| (default, Sep 24 2014, 18:32:42) [MSC > v.1 > 600 64 bit (AMD64)] on win32 > Type "help", "copyright", "credits" or "license" for more information. >>>> import pybel > Traceback (most recent call last): > File "<stdin>", line 1, in <module> > ImportError: No module named 'pybel' >>>> > > ------------------------------------------------------------------------------ > > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >
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