Dear OpenBabel community, I recently installed this software on my computer primarily to prepare small molecules for docking but have been experiencing problems. Even just trying to work through the syntax tutorial with the command:
babel -isdf 'JQ1.sdf' -osmi 'outputfile.smi' is returning errors. The error messages are: *** Open Babel Warning in OpenBabel::OBGlobalDataBase::Init Cannot open element.txt defaulting to compiled data. ============================== *** Open Babel Warning in OpenBabel::OBGlobalDataBase::Init Cannot open aromatic.txt defaulting to compiled data. ============================== *** Open Babel Warning in OpenBabel::OBGlobalDataBase::Init Cannot open atomtyp.txt defaulting to compiled data. 1 molecule converted 3 warnings 19 audit log messages I thought there could be a problem with the environment variables but it seems to be okay. If anyone could help me troubleshoot these problems, I would really appreciate it! Thanks. Stuart -- View this message in context: http://forums.openbabel.org/New-Windows-User-having-problems-with-Openbabel-tp4659411.html Sent from the General discussion mailing list archive at Nabble.com. ------------------------------------------------------------------------------ _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
