Hi, I should have installed the correct one. But readstring() is not available.
>>> print pybel.__dict__.keys() ['to_bel_path', 'from_json', 'from_cx_path', 'utils', 'parser', '__path__', 'manager', 'to_json', 'io', 'canonicalize', 'from_pickle', 'to_pickle', 'from_jsons', 'to_bytes', 'from_cx', '__all__', 'BELGraph', 'graph', 'from_cx_jsons', 'NDEX_SOURCE_FORMAT', '__package__', 'to_bel', 'from_lines', 'from_cx_json', '__doc__', 'to_neo4j', '__title__', 'to_cx_json', '__license__', 'to_jsons', '__builtins__', '__file__', 'to_cx_jsons', '__author__', 'to_csv', 'from_json_dict', 'from_path', '__name__', 'from_url', '__version__', 'constants', 'to_bel_lines', '__url__', '__copyright__', 'to_json_dict', '__description__', '__email__', 'to_cx', 'from_database', 'to_graphml', 'to_database', 'exceptions', 'database_io', 'from_bytes'] On Sun, May 7, 2017 at 9:20 PM, Hongbin Yang <yanyangh...@163.com> wrote: > Hi, Peng, > > I guess you installed pybel via `pip install pybel`, which is the > "wrong" pybel (https://pypi.python.org/pypi/PyBEL/0.5.4 ) You should install > openbabel and use it's pthon wrapper via `pip install openbabel` > (https://pypi.python.org/pypi/openbabel/2.4.1 ). > > ________________________________ > Hongbin Yang > > > From: Peng Yu > Date: 2017-05-08 09:07 > To: openbabel-discuss > Subject: [Open Babel] How to run readstring in pybel? > Hi, I got the following error. Does anybody know what is wrong? Thanks. > > $ cat main.py > #!/usr/bin/env python > > import pybel > mymol = pybel.readstring("smi", "CCCC") > print mymol.molwt > $ ./main.py > Traceback (most recent call last): > File "./main.py", line 5, in <module> > mymol = pybel.readstring("smi", "CCCC") > AttributeError: 'module' object has no attribute 'readstring' > > -- > Regards, > Peng > > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss -- Regards, Peng ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
