On 12/23/18 2:52 PM, Spencer Trinh wrote:
> output=pybel.Outputfile('svg',filename='testsvg.svg',opt={'u':None,'C':None})
>
> for name,mol in mols.items():
>
> mol.removeh()
>
> mol.title=name
>
> output.write(mol)
>
> output.close()From http://openbabel.org/docs/dev/UseTheLibrary/Python_PybelAPI.html#pybel.Outputfile: """ Although it’s possible to write a single molecule to a file by calling the write() method of a Molecule, if multiple molecules are to be written to the same file you should use the Outputfile class. """ Conversely, to write a single molecule: http://openbabel.org/docs/dev/UseTheLibrary/Python_PybelAPI.html#pybel.Molecule.write: """ Write the molecule to a file or return a string. """ svg = mol.write( format = "svg", opt = { "a" : None, "b" : "none", "i" : None } ) However, laying multiple images out on a grid is a different question. I would recommend re-posting your question with a better subject, like "how to draw multiple SVGs on a grid". Merry Christmas, -- Dimitri Maziuk Programmer/sysadmin BioMagResBank, UW-Madison -- http://www.bmrb.wisc.edu
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