I am using Openbabel GUI on windows. I am converting SMILES to xyz format using 'generate 3D coordinates' option. Everything is looking fine (viewing in gui.svg viewer in firefox) as expected. But when i am taking the output xyz data to view in other molecular editors like GaussView or Avogadro, it is not giving the structure as viewed in gui.svg. This problem is occurring mainly in using 'generate 3D coordinates' option, whereas 'generate 2D coordinates' is giving expected result.
_______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
