> $results=shell_exec('/usr/local/bin/python
> /home/monkey/Monkey0.01/selected.py -p '.$_POST['types'].' -s -1'.' -l
> '.$_POST['classlabel'].' -i '.$uploadfile_train.' -o '.$ig_anal_out.'
> 2>&1');

I'd check in your python script, but I'm willing to bet that the shell 
environment is very different.

If you post to the regular openbabel-discuss mailing list, there are many 
people who have run OB from a web service, and I'm sure someone could give you 
tips and/or sample code.

Best regards,
-Geoff
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