Thanks Noel, I had a feeling we were not on the same page.
I deleted /usr/local/lib/openbabel and usr/local/include/openbabel-2.0, deleted
anything related to pybel and openbabel in my site-packages dir, and then I
followed the new instructions:
% history
176 sudo rm -rf build
177 mkdir build
178 cd build
179 cmake ../src -DPYTHON_BINDINGS=ON -DPYTHON_PREFIX=/Users/craig/src/opv
180 cmake -j4
181 make -j4
182 sudo make install
In the python shell, I'm still getting the same error:
opv)Suva% python
Python 2.6.4 (r264:75706, Nov 15 2009, 20:20:25)
[GCC 4.2.1 (Apple Inc. build 5646) (dot 1)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import pybel
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/Users/craig/src/opv/lib/python2.6/site-packages/pybel.py", line 16, in
<module>
import openbabel as ob
File "/Users/craig/src/opv/lib/python2.6/site-packages/openbabel.py", line
98, in <module>
_openbabel = swig_import_helper()
File "/Users/craig/src/opv/lib/python2.6/site-packages/openbabel.py", line
94, in swig_import_helper
_mod = imp.load_module('_openbabel', fp, pathname, description)
ImportError:
dlopen(/Users/craig/src/opv/lib/python2.6/site-packages/_openbabel.so, 2):
Symbol not found: __ZTVN9OpenBabel20OBRMSDConformerScoreE
Referenced from:
/Users/craig/src/opv/lib/python2.6/site-packages/_openbabel.so
Expected in: dynamic lookup
I tried again with my default python location instead of a virtualenv, but the
same thing happends.
Any ideas?
Craig
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