On 23 March 2011 22:44, Andrew Fant <[email protected]> wrote: > I'm having problems building the python extensions for openbabel on > essentially virgin installation of snowleopard (thanks to a corrupted boot > disk). When I build and install openbabel-2.3.0 itself, everything is fine, > and I can use babel from the command line without any difficulty, but when I > include the python extensions, I can import pybel just fine, but as soon as I > actually make a call to the libraries, it segfaults and generates a crash > report for the nice people in Cupertino. This isn't tied to how I install > it, because when I enable testing, make tests returns with 6 failed tests, > all of the python tests. The others are all fine. I checked with google, > and I saw the note about mac builds binding to the wrong dynamic library, but > in the traceback from the segfault, there are no references to my home > directory, and all attempts to find _openbabel.so are to where it should be > (/Library/Python/2.6/site-packages ). > > The code that generates the segfault is: > > import pybel > > mymol=pybel.readstring( "smi", "CCCC") > > (the segfault actually claims to be coming from the smilesformat.so plugin, > for what it's worth) > > Can anyone make any suggestions? > > Also, as an FYI, the way that the cmake files notify people about whether the > GUI will be built and where libxml2 is found is parsed as an error by ccmake, > which prevents using that tool to configure the build. Is there any chance > that the notification method can be made more ccmake friendly?
Could you provide a patch to our CMakeLists.txt that would correct the behaviour? Or else specify the desired format of the messages? > Thanks, > Andy > > > ------------------------------------------------------------------------------ > Enable your software for Intel(R) Active Management Technology to meet the > growing manageability and security demands of your customers. Businesses > are taking advantage of Intel(R) vPro (TM) technology - will your software > be a part of the solution? Download the Intel(R) Manageability Checker > today! http://p.sf.net/sfu/intel-dev2devmar > _______________________________________________ > OpenBabel-scripting mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/openbabel-scripting > ------------------------------------------------------------------------------ Enable your software for Intel(R) Active Management Technology to meet the growing manageability and security demands of your customers. Businesses are taking advantage of Intel(R) vPro (TM) technology - will your software be a part of the solution? Download the Intel(R) Manageability Checker today! http://p.sf.net/sfu/intel-dev2devmar _______________________________________________ OpenBabel-scripting mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/openbabel-scripting
