Dear colleagues,
I tried to compile openbabel python bindings for trunk version of openbabel on
December 30 on my mac, os version 10.6.8 (with python 2.5 - perhaps it's too
old!), with the following error:
ng error:
{visvaldas}~/openbabel/build% make bindings_python -j2
[ 4%] [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/atom.o
Building CXX object src/CMakeFiles/openbabel.dir/base.o
[ 4%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.o
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/bond.o
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.o
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/builder.o
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/canon.o
<similar part chopped off - VK>
[ 95%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.o
[100%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.o
Linking CXX shared library ../lib/libopenbabel.dylib
[100%] Built target openbabel
[100%] Generating ../../scripts/python/openbabel-python.cpp,
../../scripts/python/openbabel.py
/Users/visvaldas/openbabel/include/openbabel/isomorphism.h:159: Warning 325:
Nested class not currently supported (Functor ignored)
Scanning dependencies of target bindings_python
[100%] Building CXX object
scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o
In file included from /Library/Frameworks/Python.framework/Headers/Python.h:57,
from /Users/visvaldas/openbabel/scripts/python/openbabel-python.cpp:150:
/Library/Frameworks/Python.framework/Headers/pyport.h:730:2: error: #error
"LONG_BIT definition appears wrong for platform (bad gcc/glibc config?)."
make[3]: ***
[scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o] Error 1
make[2]: *** [scripts/CMakeFiles/bindings_python.dir/all] Error 2
make[1]: *** [scripts/CMakeFiles/bindings_python.dir/rule] Error 2
make: *** [bindings_python] Error 2
Best regards,
Visvaldas
Hello Pierre,
I've been doing some work on the Python bindings getting them to work
on MacOSX 64-bit. Please try our development code (trunk). You will
need to recreate the bindings using -DRUN_SWIG=TRUE with a recent
version of Swig (>=2.0.1) on the path.
You should also "grep -i python CMakeCache.txt" and check that all of
the Python related variables are pointing to the same desired Python
installation. If not, you can edit CMakeCache.txt directly or else
specify the correct values when calling CMake.
- Noel ------------------------------------------------------------------------------
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