Hi All, reposting this as I just noticed it didn?t get thru list server. Basically I?ve recently updated an openEHR bibliography list on Zotero<https://www.zotero.org/groups/openehr> which I?ve been curating for a while. For those of you who use it Zotero (open source and plug-in to Firefox) is clearly the best! My PhD student and I can manage entries ? if you are an expert Zotero user and an academician and interested in supporting its curation please contact me and I?ll add you to the group who can add/edit citations (with full text access). Unfortunately we cannot share full text publicly.
Cheers, -koray From: Koray Atalag Sent: Friday, 26 September 2014 9:58 a.m. To: For openEHR technical discussions Cc: For openEHR clinical discussions Subject: RE: Texts about transforming between openEHR and other formalisms Thanks Diego - that's an impressive list. This reminded me something I started quite a few years ago - an online up to date bibliography of openEHR (https://www.zotero.org/groups/openehr) and closely related papers. I used the open source Zotero (http://zotero.org) which links to my browser plug-in (you can add while you browse, fantastic sensing and resolving of metadata and has word plug-in to cite and create reference list as well) so I could keep on adding new stuff as I find but also let the community grow the list as well. Much better than personal effort to keep up to date! As I remember there were a few constraints and inconveniences at that time and I'll see if it is any better now - but ultimately I think we should look at maintaining such a list and make available from openEHR website too. Any appetite / volunteers? Obviously we can't let everyone write access - it'll have to be a few of us academics to do the QA too. Cheers, -koray -----Original Message----- From: openEHR-technical [mailto:[email protected]] On Behalf Of Diego Bosc? Sent: Thursday, 25 September 2014 8:51 p.m. To: For openEHR technical discussions Subject: Re: Texts about transforming between openEHR and other formalisms I have the same doubts as Ian about which kinds of transformations you are looking for, so I'll give you a summary :) Here we have done several works regarding data instance transformation based on archetypes: - Maldonado, J. A., Moner, D., Tom?s, D., ?ngulo, C., Robles, M., & Fern?ndez, J. T. (2007). Framework for clinical data standardization based on archetypes. Studies in health technology and informatics, 129(1), 454. - Moner, D., Maldonado, J. A., Bosca, D., Fern?ndez, J. T., Angulo, C., Crespo, P., ... & Robles, M. (2006, August). Archetype-based semantic integration and standardization of clinical data. In Engineering in Medicine and Biology Society, 2006. EMBS'06. 28th Annual International Conference of the IEEE (pp. 5141-5144). IEEE. - Moner, D., Maldonado, J. A., Bosc?, D., Angulo, C., Robles, M., P?rez, D., & Serrano, P. (2010, May). CEN EN13606 normalisation framework implementation experiences. In Seamless Care, Safe Care: The Challenges of Interoperability and Patient Safety in Health Care: Proceedings of the EFMI Special Topic Conference, June 2-4, 2010, Reykjavik, Iceland (Vol. 155, p. 136). IOS Press. - Maldonado, J. A., Moner, D., Bosca, D., Angulo, C., Marco, L., Reig, E., & Robles, M. (2011, July). Concept-based exchange of healthcare information: The LinkEHR approach. In Healthcare Informatics, Imaging and Systems Biology (HISB), 2011 First IEEE International Conference on (pp. 150-157). IEEE. - Mart?nez Costa, C., Men?rguez-Tortosa, M., & Fern?ndez-Breis, J. T. (2011). Clinical data interoperability based on archetype transformation. Journal of biomedical informatics, 44(5), 869-880. - Moner, D., Moreno, A., Maldonado, J. A., Robles, M., & Parra, C. (2012, August). Using archetypes for defining CDA templates. In MIE (pp. 53-57). - Moner D. LinkEHR Studio: a tool for archetype-based data transformations. Arctic Conference 2014 (http://vimeo.com/channels/764149) Model transformations: - Mart?nez-Costa, C., Men?rguez-Tortosa, M., & Fern?ndez-Breis, J. T. (2010). An approach for the semantic interoperability of ISO EN 13606 and OpenEHR archetypes. Journal of biomedical informatics, 43(5), 736-746. - Mart?nez-Costa, C., Bosca, D., Legaz-Garc?a, M. C., Tao, C., Fern?ndez, B. J., Schulz, S., & Chute, C. G. (2012). Isosemantic Rendering of Clinical Information Using Formal Ontologies and RDF. Studies in health technology and informatics, 192, 1085-1085. - Lezcano, L., Sicilia, M. A., & Rodr?guez-Solano, C. (2011). Integrating reasoning and clinical archetypes using OWL ontologies and SWRL rules. Journal of biomedical informatics, 44(2), 343-353. - Detailed Clinical Models to facilitate inter-standard interoperability of data types. Diego Bosc?, Jos? Alberto Maldonado, David Moner, Montserrat Robles. XXIII International Conference of the European Federation for Medical Informatics (MIE 2011), Oslo; Proceedings (2011) GUI - Men?rguez-Tortosa, M., Mart?nez-Costa, C., & Fern?ndez-Breis, J. T. (2012). A generative tool for building health applications driven by iso 13606 archetypes. Journal of medical systems, 36(5), 3063-3075. - Brass, A., Moner, D., Hildebrand, C., & Robles, M. (2010). Standardized and flexible health data management with an archetype driven EHR system (EHRflex). Studies in health technology and informatics, 155, 212. One about combining all the above - Maldonado, J. A., Costa, C. M., Moner, D., Men?rguez-Tortosa, M., Bosc?, D., Mi?arro Gim?nez, J. A., ... & Robles, M. (2012). Using the ResearchEHR platform to facilitate the practical application of the EHR standards. Journal of biomedical informatics, 45(4), 746-762. Transformations for the use of archetypes for clinical guidelines - Marcos, M., Maldonado, J. A., Mart?nez-Salvador, B., Moner, D., Bosc?, D., & Robles, M. (2011). An archetype-based solution for the interoperability of computerised guidelines and electronic health records. In Artificial Intelligence in Medicine (pp. 276-285). Springer Berlin Heidelberg. (there are plenty of papers on the modeling of clinical guidelines in openEHR) Transformations of archetypes for the validation of clinical data - Pfeiffer, Klaus, Georg Duftschmid, and Christoph Rinner. ?Validating EHR Documents: Automatic Schematron Generation Using Archetypes.? Studies in Health Technology and Informatics 198 (2014): 101?7. We are currently working on a paper for the generation of implementation guides from archetypes. Archetypes are transformed into NRL (natural rules language), Schematron and other validation artifacts If you don't have access to any of the above papers I can probably provide you with preprints. 2014-09-25 9:42 GMT+02:00 Ian McNicoll <ian.mcnicoll at oceaninformatics.com<mailto:ian.mcnicoll at oceaninformatics.com>>: > Hi Silje, > > Di you mean transforms from openEHR archetypes to other design-time > formalisms e.g 13606 archetypes, CDA templates, FHIR resources? > > The work done by David Moner in LinkEhr and academic work by Cati > Martinez should be helpful > > http://person.hst.aau.dk/ska/MIE2009/papers/MIE2009p0260.pdf > > Also NEHTA used the Toolchain features in CKM ( chained XSL > transforms) to generate CDA templates from openEHR artefacts. > > OTOH perhaps you meant transforming runtime data, based on openEHR > archetypes e.g to a CDA document. This has been done by many companies > in many places but I am not sure any of it is freely available (yet). > > Would any of the openEHR vendors be prepared to share their some of > their transform source for educational purposes? > > Ian > > > > On 24 September 2014 17:01, Bakke, Silje Ljosland > <silje.ljosland.bakke at helse-bergen.no<mailto:silje.ljosland.bakke at > helse-bergen.no>> wrote: >> >> Hi, >> >> >> >> I?m wondering if anyone could point me to any publically available >> texts about transforming archetypes (and templates) from openEHR to >> other formalisms. Academic publications exploring the >> (im)possibilities of automatic transformation would be ideal. >> >> >> >> Kind regards, >> Silje Ljosland Bakke >> >> Coordinator, National Editorial Board for Archetypes, National ICT >> Norway Adviser, R&D dept, E-health section, Bergen Hospital Trust >> >> Tel. +47 40203298 >> >> >> _______________________________________________ >> openEHR-technical mailing list >> openEHR-technical at lists.openehr.org<mailto:openEHR-technical at >> lists.openehr.org> >> >> http://lists.openehr.org/mailman/listinfo/openehr-technical_lists.ope >> nehr.org > > > > > -- > Dr Ian McNicoll > office +44 (0)1536 414 994 > fax +44 (0)1536 516317 > mobile +44 (0)775 209 7859 > skype ianmcnicoll > ian.mcnicoll at oceaninformatics.com<mailto:ian.mcnicoll at > oceaninformatics.com> > > Clinical Modelling Consultant, Ocean Informatics, UK Director openEHR > Foundation www.openehr.org/knowledge<http://www.openehr.org/knowledge> > Honorary Senior Research > Associate, CHIME, UCL SCIMP Working Group, NHS Scotland BCS Primary > Health Care www.phcsg.org<http://www.phcsg.org> > > _______________________________________________ > openEHR-technical mailing list > openEHR-technical at lists.openehr.org<mailto:openEHR-technical at > lists.openehr.org> > http://lists.openehr.org/mailman/listinfo/openehr-technical_lists.open > ehr.org _______________________________________________ openEHR-technical mailing list openEHR-technical at lists.openehr.org<mailto:openEHR-technical at lists.openehr.org> http://lists.openehr.org/mailman/listinfo/openehr-technical_lists.openehr.org __________ Information from ESET NOD32 Antivirus, version of virus signature database 10465 (20140925) __________ The message was checked by ESET NOD32 Antivirus. http://www.eset.com __________ Information from ESET NOD32 Antivirus, version of virus signature database 10465 (20140925) __________ The message was checked by ESET NOD32 Antivirus. http://www.eset.com __________ Information from ESET NOD32 Antivirus, version of virus signature database 10505 (20141003) __________ The message was checked by ESET NOD32 Antivirus. http://www.eset.com __________ Information from ESET NOD32 Antivirus, version of virus signature database 10508 (20141003) __________ The message was checked by ESET NOD32 Antivirus. http://www.eset.com -------------- next part -------------- An HTML attachment was scrubbed... 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