https://bioportal.bioontology.org/

It has tons of knowledge exposed as queriable web services. All services
have an RDF output, so is perfect to demonstrate linked data

2018-02-17 15:09 GMT+01:00 Bert Verhees <bert.verh...@rosa.nl>:

> On 17-02-18 13:11, Diego Boscá wrote:
>
> Maybe it is possible to generalize it in a way that it could be external
> calls that return a value or list of values. Maybe this is enough for
> SNOMED, CDSS, but also for queries to linked data such as drug-drug
> interaction and other services availabe in bioportal, etc.
>
>
> Hi Diego, I don't know what bioportal is, and how you want to find
> drug-drug interactions. In the Netherlands we have a large and well
> maintained data-vendor for this purpose, called Z-index. But I found that
> SNOMED itself also has drug-drug interactions, and it can, maybe, also
> become a national extension to SNOMED, because drugs often differ from
> country to country.
>
> Maybe this can be decided later, and that first the focus will be on the
> SNOMED part.
>
> I was thinking in your suggested way too (I think), that a special
> value-list-layer is added inside the AQL query-engine, which can do some
> comparison at the moment the AQL engine creates a result-set (internal)
>
> What is important to decide is that the AQL is using a SNOMED resultset,
> and not the other way, so the AQL has the deep magic layer.
> So the magic will happen at a deep internal level the AQL part using the
> SNOMED part cannot be at AQL-API-level, because that would be the same as
> doing the queries separately, and that would be very costly. Although, for
> a start, this is possible.
>
> For SNOMED, I found there are API's defined or being defined, so that
> would be the stable part.
>
> What is very important, but maybe that is already taken care of, we need a
> formal way to include a SNOMED expression into an AQL query.
>
> If we are able to separate a SNOMED part from the AQL part, and define how
> it interacts with the AQL part, then we can parse that SNOMED part in a
> microservice and hand over the result to the database-specific AQL engine
> maintainers/developers.
>
> Bert
>
>
> 2018-02-17 9:23 GMT+01:00 A Verhees <bert.verh...@rosa.nl>:
>
>> The discussion Pablo has makes me think it could be good to have in an
>> AQL-engine an entry to have external query languages executed like SNOMED
>> expressions which can treat result data as hierarchies of data and so add
>> an extra functionality layer
>>
>> Bert
>>
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> Diego Boscá Tomás / Senior developer
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yamp...@gmail.com

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