Encountered the same problem:

dpkg: error processing archive 
/var/cache/apt/archives/openjdk-9-jdk_9~b114-0ubuntu1_amd64.deb (--unpack):
 trying to overwrite 
'/usr/lib/jvm/java-9-openjdk-amd64/include/linux/jawt_md.h', which is also in 
package openjdk-9-jdk-headless:amd64 9~b114-0ubuntu1

-- 
You received this bug notification because you are a member of OpenJDK,
which is subscribed to openjdk-9 in Ubuntu.
https://bugs.launchpad.net/bugs/1550950

Title:
  package openjdk-9-jdk 9~b102-1 failed to install/upgrade: trying to
  overwrite '/usr/lib/jvm/java-9-openjdk-amd64/include/linux/jawt_md.h',
  which is also in package openjdk-9-jdk-headless:amd64 9~b107-0ubuntu1

Status in One Hundred Papercuts:
  New
Status in openjdk-9 package in Ubuntu:
  Fix Released
Status in openjdk-9 source package in Xenial:
  Fix Released

Bug description:
  Ubuntu Xenial Xerus (development branch)

  ProblemType: Package
  DistroRelease: Ubuntu 16.04
  Package: openjdk-9-jdk 9~b102-1
  ProcVersionSignature: Ubuntu 4.4.0-8.23-generic 4.4.2
  Uname: Linux 4.4.0-8-generic x86_64
  ApportVersion: 2.20-0ubuntu3
  Architecture: amd64
  Date: Sun Feb 28 16:44:30 2016
  ErrorMessage: trying to overwrite 
'/usr/lib/jvm/java-9-openjdk-amd64/include/linux/jawt_md.h', which is also in 
package openjdk-9-jdk-headless:amd64 9~b107-0ubuntu1
  RelatedPackageVersions:
   dpkg 1.18.4ubuntu1
   apt  1.2.3
  SourcePackage: openjdk-9
  Title: package openjdk-9-jdk 9~b102-1 failed to install/upgrade: trying to 
overwrite '/usr/lib/jvm/java-9-openjdk-amd64/include/linux/jawt_md.h', which is 
also in package openjdk-9-jdk-headless:amd64 9~b107-0ubuntu1
  UpgradeStatus: No upgrade log present (probably fresh install)

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