It seems like you have a problem with your nlogo file or extension which is looking for a graphml on zebulon despite it is running on some other computers. Is the file "ER_edges_13000_rep_24.graphml" part of the design of experiments or is it the same for all model executions?
Romain Le 24/09/2015 23:02, Diana Sifuentes Munch a écrit : > Hello Romain, thank you very much. > > Apparently not finding the files (?). I had the same script working before > the recent OM version update. > > What changed? > > Thank you > > > Caused by: org.openmole.core.exception.UserBadDataError: Error while > executing command Expansion(ListBuffer(UnexpandedElement(run-to-grid 2000 > 1490 500 250))): > | org.nlogo.nvm.EngineException: Extension exception: > /iscpif/users/sifuentes/GraphFiles/SmallWorld1000/ER_edges_13000_rep_24.graphml > (No such file or directory) > | at java.io.FileInputStream.open0(Native Method) > | at java.io.FileInputStream.open(FileInputStream.java:195) > | at java.io.FileInputStream.<init>(FileInputStream.java:138) > | at java.io.FileInputStream.<init>(FileInputStream.java:93) > | at java.io.FileReader.<init>(FileReader.java:58) > | at > org.nlogo.extensions.nw.jung.io.GraphMLImport$.load(GraphMLImport.scala:159) > | at > org.nlogo.extensions.nw.prim.jung.LoadGraphML.createTurtles(GraphML.scala:27) > | at > org.nlogo.extensions.nw.prim.jung.LoadGraphML.createTurtles(GraphML.scala:23) > | at > org.nlogo.extensions.nw.NetworkExtensionUtil$TurtleCreatingCommand$class.perform(NetworkExtensionUtil.scala:119) > | at > org.nlogo.extensions.nw.prim.jung.LoadGraphML.perform(GraphML.scala:23) > | at org.nlogo.prim._extern.perform(_extern.java:54) > | at org.nlogo.nvm.Context.stepConcurrent(Context.java:91) > | at org.nlogo.nvm.ConcurrentJob.step(ConcurrentJob.java:82) > | at > org.nlogo.job.JobThread.org$nlogo$job$JobThread$$runPrimaryJobs(JobThread.scala:143) > | at > org.nlogo.job.JobThread$$anonfun$run$1.apply$mcV$sp(JobThread.scala:78) > | at org.nlogo.job.JobThread$$anonfun$run$1.apply(JobThread.scala:76) > | at org.nlogo.job.JobThread$$anonfun$run$1.apply(JobThread.scala:76) > | at scala.util.control.Exception$Catch.apply(Exception.scala:88) > | at org.nlogo.util.Exceptions$.handling(Exceptions.scala:41) > | at org.nlogo.job.JobThread.run(JobThread.scala:75) > at org.openmole.plugin.task.netlogo.NetLogoTask$class.org$ > > >> On 24 Sep 2015, at 22:40, Romain Reuillon <[email protected]> wrote: >> >> Hi Diana, >> >> there is a lot of warning. Could you execute error(env2) and send some >> errors that are displayed. >> >> Romain >> >> PS: beware your grid certificate expires the 30th of septembre... you >> should renew it. >> >> Le 24/09/2015 22:08, Diana Sifuentes Munch a écrit : >>> Hello, >>> >>> I am trying to do some runs on a grid. >>> >>> Every run takes a graph file of less than 1MB and runs a NetLogo task. Each >>> run takes 1.5 minutes and less than 2gb of RAM memory on a mid 2014 MacBook >>> Pro. >>> >>> I have sent ~30K jobs to the grid two days ago and even though after 24 >>> hours they started to appear to be running, none of them has returned the >>> outputs. >>> >>> Moreover, it looks like different amounts of jobs are being run each time >>> but none finish. I have run the same script on a local environment for >>> fewer jobs and it works without errors. >>> >>> Thank you in advance for your help. >>> >>> >>> Ready: 31504 >>> Running: 275 >>> Completed: 1927 >>> OpenMOLE>print(ex) >>> Ready: 31568 >>> Running: 211 >>> Completed: 1927 >>> OpenMOLE>print(ex) >>> Ready: 31573 >>> Running: 206 >>> Completed: 1927 >>> OpenMOLE>print(ex) >>> Ready: 31647 >>> Running: 132 >>> Completed: 1927 >>> OpenMOLE>print(env2) >>> Submitted: 99 >>> Running: 127 >>> Done: 61667 >>> Failed: 0 >>> 0 critical errors, 999 warning and 1 low-importance errors. Use the >>> errors() function to display them. >>> OpenMOLE>print(env2) >>> Submitted: 128 >>> Running: 164 >>> Done: 64642 >>> Failed: 0 >>> 0 critical errors, 999 warning and 1 low-importance errors. Use the >>> errors() function to display them. >>> OpenMOLE>print(ex) >>> Ready: 31618 >>> Running: 161 >>> Completed: 1927 >>> >>> >>> _______________________________________________ >>> OpenMOLE-users mailing list >>> [email protected] >>> http://fedex.iscpif.fr/mailman/listinfo/openmole-users >>> >> >> >
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