Which folder Romain? I can only see a download button for the oms file.
When I download it, I see the one that is on the screen, without any dashes.
I have cleaned the webui folder under localhost in .openmole, and now I get
new error messages that are also mysterious to me (and the fact that the
messages have changed shows that there seems to be also a cache problem
here, no?):
org.openmole.core.exception.UserBadDataError: Compilation error:
type mismatch;
found : Int.type
required: String
val savevectors0 = Val(Int)
^
on line 190
Compilation error:
type mismatch;
found : Int.type
required: String
val savefrequency0 = Val(Int)
^
on line 191
Compilation error:
type mismatch;
found : Int.type
required: String
val nbf0 = Val(Int)
^
on line 192
Compilation error:
object java.lang.String is not a value
val networkstructure0 = Val(String)
^
on line 193
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omprice = Array[Double]
^
on line 196
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omavprofit = Array[Double]
^
on line 197
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omavcapital = Array[Double]
^
on line 198
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omavtrajectory = Array[Double]
^
on line 199
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val ommaxtrajectory = Array[Double]
^
on line 200
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val ommintrajectory = Array[Double]
^
on line 201
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omtcc = Array[Double]
^
on line 202
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omnbf = Array[Double]
^
on line 203
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omnbt = Array[Double]
^
on line 204
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omavproductivity = Array[Double]
^
on line 205
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val ommaxproductivity = Array[Double]
^
on line 206
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omminproductivity = Array[Double]
^
on line 207
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omavclustering = Array[Double]
^
on line 208
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omavdistance = Array[Double]
^
on line 209
Compilation error:
type mismatch;
found : Int.type
required: String
val savevectors0 = Val(Int)
^
on line 305
Compilation error:
type mismatch;
found : Int.type
required: String
val savefrequency0 = Val(Int)
^
on line 306
Compilation error:
type mismatch;
found : Int.type
required: String
val nbf0 = Val(Int)
^
on line 307
Compilation error:
object java.lang.String is not a value
val networkstructure0 = Val(String)
^
on line 308
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omprice = Array[Double]
^
on line 311
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omavprofit = Array[Double]
^
on line 312
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omavcapital = Array[Double]
^
on line 313
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omavtrajectory = Array[Double]
^
on line 314
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val ommaxtrajectory = Array[Double]
^
on line 315
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val ommintrajectory = Array[Double]
^
on line 316
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omtcc = Array[Double]
^
on line 317
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omnbf = Array[Double]
^
on line 318
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omnbt = Array[Double]
^
on line 319
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omavproductivity = Array[Double]
^
on line 320
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val ommaxproductivity = Array[Double]
^
on line 321
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omminproductivity = Array[Double]
^
on line 322
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omavclustering = Array[Double]
^
on line 323
Compilation error:
missing arguments for method apply in object Array;
follow this method with `_' if you want to treat it as a partially applied
function
val omavdistance = Array[Double]
^
on line 324
at
org.openmole.core.console.ScalaREPL.messageToException(ScalaREPL.scala:74)
at org.openmole.core.console.ScalaREPL.compile(ScalaREPL.scala:92)
at org.openmole.console.Project.compile(Project.scala:64)
at org.openmole.console.Project.compile(Project.scala:58)
at org.openmole.gui.server.core.ApiImpl$.runScript(ApiImpl.scala:160)
at
org.openmole.gui.server.core.GUIServlet$$anonfun$12$$anonfun$apply$1.applyOrElse(GUIServlet.scala:179)
at
org.openmole.gui.server.core.GUIServlet$$anonfun$12$$anonfun$apply$1.applyOrElse(GUIServlet.scala:179)
at
scala.runtime.AbstractPartialFunction.apply(AbstractPartialFunction.scala:36)
at
org.openmole.gui.server.core.GUIServlet$$anonfun$12.apply(GUIServlet.scala:179)
at
org.openmole.gui.server.core.GUIServlet$$anonfun$12.apply(GUIServlet.scala:179)
at org.scalatra.ScalatraBase$class.org
$scalatra$ScalatraBase$$liftAction(ScalatraBase.scala:270)
at
org.scalatra.ScalatraBase$$anonfun$invoke$1.apply(ScalatraBase.scala:265)
at
org.scalatra.ScalatraBase$$anonfun$invoke$1.apply(ScalatraBase.scala:265)
at
org.scalatra.ScalatraBase$class.withRouteMultiParams(ScalatraBase.scala:341)
at
org.scalatra.ScalatraServlet.withRouteMultiParams(ScalatraServlet.scala:49)
at org.scalatra.ScalatraBase$class.invoke(ScalatraBase.scala:264)
at org.scalatra.ScalatraServlet.invoke(ScalatraServlet.scala:49)
at
org.scalatra.ScalatraBase$$anonfun$runRoutes$1$$anonfun$apply$8.apply(ScalatraBase.scala:240)
at
org.scalatra.ScalatraBase$$anonfun$runRoutes$1$$anonfun$apply$8.apply(ScalatraBase.scala:238)
at scala.Option.flatMap(Option.scala:171)
at
org.scalatra.ScalatraBase$$anonfun$runRoutes$1.apply(ScalatraBase.scala:238)
at
org.scalatra.ScalatraBase$$anonfun$runRoutes$1.apply(ScalatraBase.scala:237)
at scala.collection.immutable.Stream.flatMap(Stream.scala:489)
at org.scalatra.ScalatraBase$class.runRoutes(ScalatraBase.scala:237)
at org.scalatra.ScalatraServlet.runRoutes(ScalatraServlet.scala:49)
at org.scalatra.ScalatraBase$class.runActions$1(ScalatraBase.scala:163)
at
org.scalatra.ScalatraBase$$anonfun$executeRoutes$1.apply$mcV$sp(ScalatraBase.scala:175)
at
org.scalatra.ScalatraBase$$anonfun$executeRoutes$1.apply(ScalatraBase.scala:175)
at
org.scalatra.ScalatraBase$$anonfun$executeRoutes$1.apply(ScalatraBase.scala:175)
at org.scalatra.ScalatraBase$class.org
$scalatra$ScalatraBase$$cradleHalt(ScalatraBase.scala:193)
at org.scalatra.ScalatraBase$class.executeRoutes(ScalatraBase.scala:175)
at org.scalatra.ScalatraServlet.executeRoutes(ScalatraServlet.scala:49)
at
org.scalatra.ScalatraBase$$anonfun$handle$1.apply$mcV$sp(ScalatraBase.scala:113)
at
org.scalatra.ScalatraBase$$anonfun$handle$1.apply(ScalatraBase.scala:113)
at
org.scalatra.ScalatraBase$$anonfun$handle$1.apply(ScalatraBase.scala:113)
at scala.util.DynamicVariable.withValue(DynamicVariable.scala:58)
at org.scalatra.DynamicScope$class.withResponse(DynamicScope.scala:80)
at org.scalatra.ScalatraServlet.withResponse(ScalatraServlet.scala:49)
at
org.scalatra.DynamicScope$$anonfun$withRequestResponse$1.apply(DynamicScope.scala:60)
at scala.util.DynamicVariable.withValue(DynamicVariable.scala:58)
at org.scalatra.DynamicScope$class.withRequest(DynamicScope.scala:71)
at org.scalatra.ScalatraServlet.withRequest(ScalatraServlet.scala:49)
at
org.scalatra.DynamicScope$class.withRequestResponse(DynamicScope.scala:59)
at
org.scalatra.ScalatraServlet.withRequestResponse(ScalatraServlet.scala:49)
at org.scalatra.ScalatraBase$class.handle(ScalatraBase.scala:111)
at org.scalatra.ScalatraServlet.org
$scalatra$servlet$ServletBase$$super$handle(ScalatraServlet.scala:49)
at org.scalatra.servlet.ServletBase$class.handle(ServletBase.scala:43)
at org.openmole.gui.server.core.GUIServlet.org
$scalatra$servlet$FileUploadSupport$$super$handle(GUIServlet.scala:47)
at
org.scalatra.servlet.FileUploadSupport$class.handle(FileUploadSupport.scala:93)
at org.openmole.gui.server.core.GUIServlet.handle(GUIServlet.scala:47)
at org.scalatra.ScalatraServlet.service(ScalatraServlet.scala:54)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:848)
at
org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:669)
at
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:455)
at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137)
at
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:560)
at
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231)
at
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1072)
at
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:382)
at
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193)
at
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1006)
at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135)
at
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)
at org.eclipse.jetty.server.Server.handle(Server.java:365)
at
org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:485)
at
org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:937)
at
org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:998)
at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:856)
at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240)
at
org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82)
at org.eclipse.jetty.io.nio.SslConnection.handle(SslConnection.java:196)
at
org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:628)
at
org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52)
at
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608)
at
org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543)
at java.lang.Thread.run(Thread.java:724)
2015-11-03 16:07 GMT+01:00 Romain Reuillon <[email protected]>:
> There is a download button for the folder can you download it and attach
> it here?
>
>
> Le 03/11/2015 15:53, Murat Yildizoglu a écrit :
>
> Hi,
> I have a unique mole script in the folder that contains the netlogo file,
> and I upload it on the web interface to use it, after having deleted the
> old version in the web interface.
>
> Is there another cache folder where OM stocks its files and scripts? If
> yes how to clan it and why the old script seems to survive there?
>
> I have even eliminated the dashes from all variables that are accessed by
> OM (including the NL variables that appear in the NLoutput instructions),
> but I continue to get the same error.
>
> I am getting very mad at this mystery :-(
>
> 2015-11-03 15:29 GMT+01:00 Romain Reuillon <[email protected]>:
>
>> That's because the oms which contains the error is in the same directory
>> as you current script. You can import element from one script to another in
>> a directory, that's why all the script are compiled. If the scripts are
>> unrelated you can store them in separate folders.
>>
>>
>> Le 03/11/2015 15:15, Murat Yildizoglu a écrit :
>>
>> Hi Romain,
>>
>> I have discovered that indeed, but you can see in the bottom part of my
>> mail that I do not use them in my mole anymore. So I am suprised to
>> continue to get this message over and over when I try to compile the
>> modified mole without dashes.
>>
>> Best,
>>
>> Murat
>>
>> 2015-11-03 15:03 GMT+01:00 Romain Reuillon < <[email protected]>
>> [email protected]>:
>>
>>> Hi Murat,
>>>
>>> you may not you the '-' letter in variables names in OpenMOLE / scala...
>>> You may use '_' instead.
>>>
>>> Romain
>>>
>>>
>>> Le 03/11/2015 14:55, Murat Yildizoglu a écrit :
>>>
>>> Hi, I am advancing in my experiments with OM and NL.
>>> I have been able to send my runs to our cluster and get back my results
>>> for the last period.
>>> I am transforming my mole and my NL file in order to get time series
>>> from runs.
>>>
>>> But I am getting a strange problem: I have initially had some vaiables
>>> with a dash in their name, and I have had to change them of course. I do
>>> not have any of them in my mole (while I have dashes in the NL variables).
>>> When I click on the Play button, the compilation fails with the following
>>> messages for all such variables:
>>>
>>> org.openmole.core.exception.UserBadDataError: Compilation error:
>>> om is already defined as value om
>>> val om-avprofit-vector = Array[Double]
>>> ^
>>> on line 199
>>>
>>> (what is the object of these references to line numbers by the way?)
>>>
>>> As you can see below, I do not have such variable names in my mole.
>>> Do you have any idea how this happens, and how I can solve this?
>>>
>>> Thank you in advance for your help! I am quite at loss here...
>>>
>>> val iota22 = Val[Int]
>>> val mu22 = Val[Int]
>>> val probrad = Val[Double]
>>>
>>> // Time series
>>> val omprice = Array[Double]
>>> val omavprofit = Array[Double]
>>> val omavcapital = Array[Double]
>>> val omavtrajectory = Array[Double]
>>> val ommaxtrajectory = Array[Double]
>>> val ommintrajectory = Array[Double]
>>> val omtcc = Array[Double]
>>> val omnbf = Array[Double]
>>> val omnbt = Array[Double]
>>> val omavproductivity = Array[Double]
>>> val ommaxproductivity = Array[Double]
>>> val omminproductivity = Array[Double]
>>> val omavclustering = Array[Double]
>>> val omavdistance = Array[Double]
>>>
>>> val exploration =
>>> ExplorationTask(
>>> // (iota22 in (0 to 3 by 1)) x
>>> (mu22 in (0 to 3 by 1)) x
>>> (probrad in (0.1 to 0.4 by 0.05))
>>> )
>>>
>>> val savevectors0 = 1
>>> val savefrequency0 = 10
>>> val networkstructure0 = "Lattice"
>>> val nbf0 = 25 //225
>>>
>>> val cmds = List(
>>> "init-grid-globals",
>>> "setup",
>>> "while [ticks < 100] repeat ${savefrequency0}[go]")
>>>
>>> val myTask =
>>>
>>> NetLogo5Task("/Users/myildi/Dropbox/These-vanDerPol/Modele/openmole/VDPMYV02-om.nlogo",
>>> cmds,true) set (
>>> outputs +=
>>> (iota22,mu22,probrad,savevectors0,savefrequency0,nbf0,networkstructure0),
>>> netLogoInputs += (iota22, "iota2"),
>>> netLogoInputs += (mu22, "mu2"),
>>> netLogoInputs += (probrad, "probrad2"),
>>> netLogoInputs += (savevectors0, "save-vectors"),
>>> netLogoInputs += (savefrequency0, "save-frequency"),
>>> netLogoInputs += (nbf0, "nbf0"),
>>> netLogoInputs += (networkstructure0, "net-structure"),
>>> netLogoOutputs += ("om-price-vector", omprice),
>>> netLogoOutputs += ("om-avprofit-vector", omavprofit),
>>> netLogoOutputs += ("om-avcapital-vector", omavcapital),
>>> netLogoOutputs += ("om-avtrajectory-vector", omavtrajectory),
>>> netLogoOutputs += ("om-maxtrajectory-vector", ommaxtrajectory),
>>> netLogoOutputs += ("om-mintrajectory-vector", ommintrajectory),
>>> netLogoOutputs += ("om-tcc-vector", omtcc),
>>> netLogoOutputs += ("om-nbf-vector", omnbf),
>>> netLogoOutputs += ("om-nbt-vector", omnbt),
>>> netLogoOutputs += ("om-avproductivity-vector", omavproductivity),
>>> netLogoOutputs += ("om-maxproductivity-vector", ommaxproductivity),
>>> netLogoOutputs += ("om-minproductivity-vector", omminproductivity),
>>> netLogoOutputs += ("om-avclustering-vector", omavclustering),
>>> netLogoOutputs += ("om-avdistance-vector", omavdistance)
>>> )
>>>
>>> val env1 = LocalEnvironment(4)
>>>
>>>
>>>
>>> val csvHook =
>>> AppendToCSVFileHook("/Users/myildi/Dropbox/These-vanDerPol/Modele/openmole/result-om-test.csv",
>>>
>>> iota22,mu22,probrad,savevectors0,savefrequency0,nbf0,networkstructure0,
>>> omprice,
>>> omavprofit,
>>> omavcapital,
>>> omavtrajectory,
>>> ommaxtrajectory,
>>> ommintrajectory,
>>> omtcc,
>>> omnbf,
>>> omnbt,
>>> omavproductivity,
>>> ommaxproductivity,
>>> omminproductivity,
>>> omavclustering,
>>> omavdistance
>>> )
>>>
>>> exploration -< (myTask on env1 hook csvHook)
>>>
>>>
>>>
>>>
>>> --
>>> Prof. Murat Yildizoglu
>>>
>>> Note: Please use the following address as such
>>>
>>> UNIVERSITE DE BORDEAUX
>>> GREThA (UMR CNRS 5113)
>>> MURAT YILDIZOGLU
>>> 16 AVENUE LEON DUGUIT
>>> CS 50057
>>> 33608 PESSAC CEDEX
>>> FRANCE
>>>
>>> Bureau : E-331
>>>
>>> mail: murat.yildizoglu at u-bordeaux.fr
>>>
>>> web: <http://www.yildizoglu.fr>www.yildizoglu.fr
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> OpenMOLE-users mailing
>>> [email protected]http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>>>
>>>
>>>
>>> _______________________________________________
>>> OpenMOLE-users mailing list
>>> [email protected]
>>> http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>>>
>>>
>>
>>
>> --
>> Prof. Murat Yildizoglu
>>
>> Note: Please use the following address as such
>>
>> UNIVERSITE DE BORDEAUX
>> GREThA (UMR CNRS 5113)
>> MURAT YILDIZOGLU
>> 16 AVENUE LEON DUGUIT
>> CS 50057
>> 33608 PESSAC CEDEX
>> FRANCE
>>
>> Bureau : E-331
>>
>> mail: murat.yildizoglu at u-bordeaux.fr
>>
>> web: www.yildizoglu.fr
>>
>>
>> _______________________________________________
>> OpenMOLE-users mailing
>> [email protected]http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>>
>>
>>
>> _______________________________________________
>> OpenMOLE-users mailing list
>> [email protected]
>> http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>>
>>
>
>
> --
> Prof. Murat Yildizoglu
>
> Note: Please use the following address as such
>
> UNIVERSITE DE BORDEAUX
> GREThA (UMR CNRS 5113)
> MURAT YILDIZOGLU
> 16 AVENUE LEON DUGUIT
> CS 50057
> 33608 PESSAC CEDEX
> FRANCE
>
> Bureau : E-331
>
> mail: murat.yildizoglu at u-bordeaux.fr
>
> web: www.yildizoglu.fr
>
>
> _______________________________________________
> OpenMOLE-users mailing
> [email protected]http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>
>
>
> _______________________________________________
> OpenMOLE-users mailing list
> [email protected]
> http://fedex.iscpif.fr/mailman/listinfo/openmole-users
>
>
--
Prof. Murat Yildizoglu
Note: Please use the following address as such
UNIVERSITE DE BORDEAUX
GREThA (UMR CNRS 5113)
MURAT YILDIZOGLU
16 AVENUE LEON DUGUIT
CS 50057
33608 PESSAC CEDEX
FRANCE
Bureau : E-331
mail: murat.yildizoglu at u-bordeaux.fr
web: www.yildizoglu.fr
_______________________________________________
OpenMOLE-users mailing list
[email protected]
http://fedex.iscpif.fr/mailman/listinfo/openmole-users
