Hoho
Nice Romain ! True ... It doesn't embed files in:
r_run_netlogo/rootfs/home/delaye/github/projet42/nlogo/data/maps_space/
Any ideas how to do that ? I have found the manual
https://github.com/proot-me/PRoot/blob/master/doc/care/manual.txt
so my care command look like that :
./care-x86_64 -r /home/delaye/github/projet42/nlogo/data/maps_agents/*
-r /home/delaye/github/projet42/nlogo/data/maps_space/ -r
/home/delaye/github/projet42/nlogo/data/ -r
/home/delaye/github/projet42/netlogo-5.3.1-64/app/ -o
r_run_netlogo.tar.gz.bin R --slave -f netlogo_run.R --args 4
But it doesn't take care of files in
/home/delaye/github/projet42/nlogo/data/maps_space/ ....
E.
Le 19/07/2016 à 15:06, Romain Reuillon a écrit :
Hi Etienne,
do you manage to reexecute you CARE archive outside of openmole ? You
may try it by running ./carearchivename.tgz.bin
Romain
Le 19/07/2016 à 15:00, Delay Etienne a écrit :
After some investigation ... It seems to be care my problem ...
OpenMole said : Java-Object{org.nlogo.nvm.EngineException: The file
/home/delaye/github/projet42/nlogo/data/maps_agents/input_agents_100_10_.txt
cannot be found}"
So how to specify in Care to embed recursively directory and files ?
E.
Le 19/07/2016 à 14:12, Delay Etienne a écrit :
Hi all,
Today I'm trying to run an R script that embeds and command NetLogo. It
seems tricky to configure with Care and I need a hand ...
first of all OpenMole send me that :
org.openmole.core.exception.InternalProcessingError: Error for context
values in CARETask@-208567776 {i=10, oMSeed=-1969014527224670348}
at
org.openmole.core.workflow.tools.InputOutputCheck$class.perform(InputOutputCheck.scala:94)
at org.openmole.plugin.task.care.CARETask.perform(CARETask.scala:71)
at org.openmole.core.workflow.task.Task$class.perform(Task.scala:59)
at org.openmole.plugin.task.care.CARETask.perform(CARETask.scala:71)
at org.openmole.core.workflow.job.MoleJob.perform(MoleJob.scala:102)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1.apply(LocalExecutor.scala:82)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1$$anonfun$apply$1.apply(LocalExecutor.scala:64)
at scala.collection.immutable.List.foreach(List.scala:381)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1.apply(LocalExecutor.scala:64)
at
org.openmole.core.workflow.execution.local.LocalExecutor$$anonfun$1.apply(LocalExecutor.scala:61)
at
org.openmole.core.output.OutputManager$.withStreamOutputs(OutputManager.scala:99)
at
org.openmole.core.workflow.execution.local.LocalExecutor.withRedirectedOutput(LocalExecutor.scala:128)
at
org.openmole.core.workflow.execution.local.LocalExecutor.run(LocalExecutor.scala:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.openmole.core.exception.InternalProcessingError: Error
executing command":
[./re-execute.sh R --slave -f netlogo_run.R --args 10] return code was
not 0 but 1
at
org.openmole.plugin.task.care.CARETask$$anonfun$process$1.apply(CARETask.scala:159)
at
org.openmole.plugin.task.care.CARETask$$anonfun$process$1.apply(CARETask.scala:93)
at
org.openmole.plugin.task.external.External.withWorkDir(External.scala:176)
at org.openmole.plugin.task.care.CARETask.process(CARETask.scala:93)
at
org.openmole.core.workflow.task.Task$$anonfun$perform$1.apply(Task.scala:59)
at
org.openmole.core.workflow.task.Task$$anonfun$perform$1.apply(Task.scala:59)
at
org.openmole.core.workflow.tools.InputOutputCheck$class.perform(InputOutputCheck.scala:91)
... 13 more
In attachment you can find my oms file and my script R .
Someone has ever played in this situation ?
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--
Cordialement
Etienne DELAY
Chaire: Capital environnemental et gestion durable des cours d'eau
laboratoire GEOLAB UMR 6042 CNRS
Université de Limoges, FLSH
39E rue Camille Guérin 87036 Limoges
blog : http://elcep.legtux.org
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