You have to do it from each application. openssl is an application that
statically links the crypto libraries. Even if you used the dynamic crypto
libraries (so or dll depending on your platform). you still have to set it.
Look at the  FIPS_140-2-opensslUserGuide. There are a couple version out
there, but all have the basic question you are asking. Also, make sure you
read the FIPS_1402-opensslSecurityPolicy document. 

Last, you may find this link helpful for testing and validating:

http://openssl.com/fips/2.0/platforms/ for help with specific platforms.



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