Hello community, here is the log from the commit of package R-base for openSUSE:Factory checked in at 2016-11-01 09:59:04 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Comparing /work/SRC/openSUSE:Factory/R-base (Old) and /work/SRC/openSUSE:Factory/.R-base.new (New) ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "R-base" Changes: -------- --- /work/SRC/openSUSE:Factory/R-base/R-base.changes 2016-07-12 23:51:35.000000000 +0200 +++ /work/SRC/openSUSE:Factory/.R-base.new/R-base.changes 2016-11-01 09:59:06.000000000 +0100 @@ -1,0 +2,161 @@ +Mon Oct 31 11:50:08 UTC 2016 - [email protected] + +- upstream release 3.3.2 + +- Most important changes + CHANGES IN R 3.3.2: + + NEW FEATURES: + + * extSoftVersion() now reports the version (if any) of the readline + library in use. + + * The version of LAPACK included in the sources has been updated to + 3.6.1, a bug-fix release including a speedup for the + non-symmetric case of eigen(). + + * Use options(deparse.max.lines=) to limit the number of lines + recorded in .Traceback and other deparsing activities. + + * format(<AsIs>) looks more regular, also for non-character atomic + matrices. + + * abbreviate() gains an option named = TRUE. + + * The online documentation for package methods is extensively + rewritten. The goals are to simplify documentation for basic + use, to note old features not recommended and to correct + out-of-date information. + + * Calls to setMethod() no longer print a message when creating a + generic function in those cases where that is natural: S3 + generics and primitives. + + INSTALLATION and INCLUDED SOFTWARE: + + * Versions of the readline library >= 6.3 had been changed so that + terminal window resizes were not signalled to readline: code has + been added using a explicit signal handler to work around that + (when R is compiled against readline >= 6.3). (PR#16604) + + * configure works better with Oracle Developer Studio 12.5. + + UTILITIES: + + * R CMD check reports more dubious flags in files + src/Makevars[.in], including -w and -g. + + * R CMD check has been set up to filter important warnings from + recent versions of gfortran with -Wall -pedantic: this now + reports non-portable GNU extensions such as out-of-order + declarations. + + * R CMD config works better with paths containing spaces, even + those of home directories (as reported by Ken Beath). + + DEPRECATED AND DEFUNCT: + + * Use of the C/C++ macro NO_C_HEADERS is deprecated (no C headers + are included by R headers from C++ as from R 3.3.0, so it should + no longer be needed). + + BUG FIXES: + + * The check for non-portable flags in R CMD check could be stymied + by src/Makevars files which contained targets. + + * (Windows only) When using certain desktop themes in Windows 7 or + higher, Alt-Tab could cause Rterm to stop accepting input. + (PR#14406; patch submitted by Jan Gleixner.) + + * pretty(d, ..) behaves better for date-time d (PR#16923). + + * When an S4 class name matches multiple classes in the S4 cache, + perform a dynamic search in order to obey namespace imports. + This should eliminate annoying messages about multiple hits in + the class cache. Also, pass along the package from the + ClassExtends object when looking up superclasses in the cache. + + * sample(NA_real_) now works. + + * Packages using non-ASCII encodings in their code did not install + data properly on systems using different encodings. + + * merge(df1, df2) now also works for data frames with column names + "na.last", "decreasing", or "method". (PR#17119) + + * contour() caused a segfault if the labels argument had length + zero. (Reported by Bill Dunlap.) + + * unique(warnings()) works more correctly, thanks to a new + duplicated.warnings() method. + + * findInterval(x, vec = numeric(), all.inside = TRUE) now returns + 0s as documented. (Reported by Bill Dunlap.) + + * (Windows only) R CMD SHLIB failed when a symbol in the resulting + library had the same name as a keyword in the .def file. + (PR#17130) + + * pmax() and pmin() now work with (more ?) classed objects, such + as "Matrix" from the Matrix package, as documented for a long + time. + + * axis(side, x = D) and hence Axis() and plot() now work correctly + for "Date" and time objects D, even when "time goes backward", + e.g., with decreasing xlim. (Reported by William May.) + + * str(I(matrix(..))) now looks as always intended. + + * plot.ts(), the plot() method for time series, now respects cex, + lwd and lty. (Reported by Greg Werbin.) + + * parallel::mccollect() now returns a named list (as documented) + when called with wait = FALSE. (Reported by Michel Lang.) + + * If a package added a class to a class union in another package, + loading the first package gave erroneous warnings about + "undefined subclass". + + * c()'s argument use.names is documented now, as belonging to the + (C internal) default method. In "parallel", argument recursive + is also moved from the generic to the default method, such that + the formal argument list of base generic c() is just (...). + + * rbeta(4, NA) and similarly rgamma() and rnbinom() now return + NaN's with a warning, as other r<dist>(), and as documented. + (PR#17155) + + * Using options(checkPackageLicense = TRUE) no longer requires + acceptance of the licence for non-default standard packages such + as compiler. (Reported by Mikko Korpela.) + + * split(<very_long>, *) now works even when the split off parts are + long. (PR#17139) + + * min() and max() now also work correctly when the argument list + starts with character(0). (PR#17160) + + * Subsetting very large matrices (prod(dim(.)) >= 2^31) now works + thanks to Michael Schubmehl's PR#17158. + + * bartlett.test() used residual sums of squares instead of + variances, when the argument was a list of lm objects. (Reported + by Jens Ledet Jensen). + + * plot(<lm>, which = *) now correctly labels the contour lines for + the standardized residuals for which = 6. It also takes the + correct p in case of singularities (also for which = 5). + (PR#17161) + + * xtabs(~ exclude) no longer fails from wrong scope, thanks to + Suharto Anggono's PR#17147. + + * Reference class calls to methods() did not re-analyse previously + defined methods, meaning that calls to methods defined later + would fail. (Reported by Charles Tilford). + + * findInterval(x, vec, left.open = TRUE) misbehaved in some cases. + (Reported by Dmitriy Chernykh.) + +------------------------------------------------------------------- Old: ---- R-3.3.1.tar.bz2 New: ---- R-3.3.2.tar.bz2 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ ++++++ R-base.spec ++++++ --- /var/tmp/diff_new_pack.NehfIq/_old 2016-11-01 09:59:08.000000000 +0100 +++ /var/tmp/diff_new_pack.NehfIq/_new 2016-11-01 09:59:08.000000000 +0100 @@ -19,7 +19,7 @@ %define release 1 Name: R-base -Version: 3.3.1 +Version: 3.3.2 Release: %release %define Rversion %{version} Source: R-%{version}.tar.bz2 @@ -478,8 +478,8 @@ %package -n R-compiler Summary: Package providing R-core packages R-compiler -Group: Development/Libraries/Other #Provides: R-compiler = %{version} +Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-compiler @@ -1152,7 +1152,7 @@ %package -n R-cluster Summary: Package provides recommended R-cluster Group: Development/Libraries/Other -Version: 2.0.4 +Version: 2.0.5 Release: %release Requires: R-base @@ -1186,7 +1186,7 @@ %package -n R-codetools Summary: Package provides recommended R-codetools Group: Development/Libraries/Other -Version: 0.2.14 +Version: 0.2.15 Release: %release Requires: R-base @@ -1210,7 +1210,7 @@ %package -n R-foreign Summary: Package provides recommended R-foreign Group: Development/Libraries/Other -Version: 0.8.66 +Version: 0.8.67 Release: %release Requires: R-base @@ -1273,7 +1273,7 @@ %package -n R-lattice Summary: Package provides recommended R-lattice Group: Development/Libraries/Other -Version: 0.20.33 +Version: 0.20.34 Release: %release Requires: R-base @@ -1344,7 +1344,7 @@ %package -n R-Matrix Summary: Package provides recommended R-Matrix Group: Development/Libraries/Other -Version: 1.2.6 +Version: 1.2.7.1 Release: %release Requires: R-base @@ -1383,7 +1383,7 @@ %package -n R-Matrix-devel Summary: Package provides header files for recommended R-Matrix Group: Development/Libraries/Other -Version: 1.2.6 +Version: 1.2.7.1 Release: %release Requires: R-Matrix Requires: R-base @@ -1404,7 +1404,7 @@ %package -n R-mgcv Summary: Package provides recommended R-mgcv Group: Development/Libraries/Other -Version: 1.8.12 +Version: 1.8.15 Release: %release Requires: R-base @@ -1579,7 +1579,7 @@ %package -n R-survival Summary: Package provides recommended R-survival Group: Development/Libraries/Other -Version: 2.39.4 +Version: 2.39.5 Release: %release Requires: R-base ++++++ R-3.3.1.tar.bz2 -> R-3.3.2.tar.bz2 ++++++ /work/SRC/openSUSE:Factory/R-base/R-3.3.1.tar.bz2 /work/SRC/openSUSE:Factory/.R-base.new/R-3.3.2.tar.bz2 differ: char 11, line 1
