Hello community,
here is the log from the commit of package python-scikit-image for
openSUSE:Factory checked in at 2019-11-15 22:31:46
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Comparing /work/SRC/openSUSE:Factory/python-scikit-image (Old)
and /work/SRC/openSUSE:Factory/.python-scikit-image.new.26869 (New)
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Package is "python-scikit-image"
Fri Nov 15 22:31:46 2019 rev:9 rq:747195 version:0.16.2
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-scikit-image/python-scikit-image.changes
2019-08-05 10:36:21.819334667 +0200
+++
/work/SRC/openSUSE:Factory/.python-scikit-image.new.26869/python-scikit-image.changes
2019-11-15 22:31:50.508084776 +0100
@@ -1,0 +2,162 @@
+Sat Nov 9 14:58:21 UTC 2019 - Arun Persaud <[email protected]>
+
+- specfile:
+ * remove two patched (included upstream):
+ - fix_numpy_1_17.patch
+ - fix_numpy_matrix_warning_test.patch
+ * add test requirement imageio
+
+- update to version 0.16.2:
+ * Bug fixes
+ + Migrate to networkx 2.x (#4236, #4237)
+ + Sync required numpy and dask to runtime versions (#4233, #4239)
+ + Fix wrong argument parsing in structural_similarity (#4246,
+ #4247)
+ + Fix active contour gallery example after change to rc
+ coordinates (#4257, #4262)
+
+- changes from version 0.16.1:
+ * New Features
+ + New `skimage.evaluate` module containing simple metrics (mse,
+ nrme, psd) and segmentation metrics (adapted rand error,
+ variation of information) (#4025)
+ + n-dimensional TV-L1 optical flow algorithm for registration --
+ `skimage.registration.optical_flow_tvl1` (#3983)
+ + Draw a line in an n-dimensional array -- `skimage.draw.line_nd`
+ (#2043)
+ + 2D Farid & Simoncelli edge filters - `skimage.filters.farid`,
+ `skimage.filters.farid_h`, and `skimage.filters.farid_v` (#3775)
+ + 2D majority voting filter assigning to each pixel the most
+ commonly occurring value within its neighborhood --
+ `skimage.filters.majority` (#3836, #3839)
+ + Multi-level threshold "multi-Otsu" method, a thresholding
+ algorithm used to separate the pixels of an input image into
+ several classes by maximizing the variances between classes --
+ `skimage.filters.threshold_multiotsu` (#3872, #4174)
+ + New example data -- `skimage.data.shepp_logan_phantom`,
+ `skimage.data.colorwheel`, `skimage.data.brick`,
+ `skimage.data.grass`, `skimage.data.roughwall`,
+ `skimage.data.cell` (#3958, #3966)
+ + Compute and format image region properties as a table
+ --.measure.regionprops_table` (#3959)
+ + Convert a polygon into a mask -- `skimage.draw.poly2mask`
+ (#3971, #3977)
+ + Visual image comparison helper `skimage.util.compare_images`,
+ that returns an image showing the difference between two input
+ images (#4089)
+ + `skimage.transform.warp_polar` to remap image into polar or
+ log-polar coordinates. (#4097)
+ * Improvements
+ + RANSAC: new option to set initial samples selected for
+ initialization (#2992)
+ + Better repr and str for `skimage.transform.ProjectiveTransform`
+ (#3525, #3967)
+ + Better error messages and data type stability to
+ `skimage.segmentation.relabel_sequential` (#3740)
+ + Improved compatibility with dask arrays in some image
+ thresholding methods (#3823)
+ + `skimage.io.ImageCollection` can now receive lists of patterns
+ (#3928)
+ + Speed up `skimage.feature.peak_local_max` (#3984)
+ + Better error message when incorrect value for keyword argument
+ `kind` in.color.label2rgb` (#4055)
+ + All functions from `skimage.drawing` now supports multi-channel
+ 2D images (#4134)
+ * API Changes
+ + Deprecated subpackage "skimage.novice" has been removed.
+ + Default value of "multichannel" parameters has been set to False
+ in `skimage.transform.rescale`,
+ `skimage.transform.pyramid_reduce`,
+ `skimage.transform.pyramid_laplacian`,.transform.pyramid_gaussian`,
+ and `skimage.transform.pyramid_expand`. Guessing is no longer
+ performed for 3D.
+ + Deprecated argument "visualise" has been removed
+ from.feature.hog`. Use "visualize" instead.ยจ
+ + `skimage.transform.seam_carve` has been completely removed from
+ the library due to licensing restrictions.
+ + Parameter "as_grey" has been removed from `skimage.data.load`
+ and `skimage.io.imread`. Use "as_gray" instead.
+ + Parameter "min_size" has been removed from
+ `skimage.morphology.remove_small_holes`. Use "area_threshold"
+ instead.
+ + Deprecated "correct_mesh_orientation" in `skimage.measure` has
+ been removed.
+ + `skimage.measure._regionprops` has been completely switched to
+ using-column coordinates. Old x-y interface is not longer
+ available.
+ + Default value of "behavior" parameter has been set to "ndimage"
+ in `skimage.filters.median`.
+ + Parameter "flatten" in `skimage.io.imread` has been removed in
+ favor of "as_gray".
+ + Parameters "Hxx, Hxy, Hyy" have been removed from
+ `skimage.feature.corner.hessian_matrix_eigvals` in favor of
+ "H_elems".
+ + Default value of "order" parameter has been set to "rc" in
+ `skimage.feature.hessian_matrix`.
+ + "skimage.util.img_as_*" functions no longer raise precision
+ and/or loss warnings.
+ * Bugfixes
+ + Corrected error with scales attribute in ORB.detect_and_extract
+ (#2835) The scales attribute wasn't taking into account the
+ mask, and thus was using an incorrect array size.
+ + Correct for bias in Inverse Randon Transform
+ (`skimage.transform.irandon`) (#3067) Fixed by using the Ramp
+ filter equation in the spatial domain as described in the
+ reference
+ + Fix a rounding issue that caused a rotated image to have a
+ different size than the input (`skimage.transform.rotate`)
+ (#3173)
+ + RANSAC uses random subsets of the original data and not
+ bootstraps. (#3901, #3915)
+ + Canny now produces the same output regardless of dtype (#3919)
+ + Geometry Transforms: avoid division by zero & some degenerate
+ cases (#3926)
+ + Fixed float32 support in denoise_bilateral and
+ denoise_tv_bregman (#3936)
+ + Fixed computation of Meijering filter and avoid
+ ZeroDivisionError (#3957)
+ + Fixed `skimage.filters.threshold_li` to prevent being stuck on
+ stationnary points, and thus at local minima or maxima (#3966)
+ + Edited `skimage.exposure.rescale_intensity` to return input
+ image instead of nans when all 0 (#4015)
+ + Fixed `skimage.morphology.medial_axis`. A wrong indentation in
+ Cython caused the function to not behave as intended. (#4060)
+ + Fixed `skimage.restoration.denoise_bilateral` by correcting the
+ padding in the gaussian filter(#4080)
+ + Fixed `skimage.measure.find_contours` when input image contains
+ NaN. Contours interesting NaN will be left open (#4150)
+ + Fixed `skimage.feature.blob_log` and `skimage.feature.blob_dog`
+ for 3D images and anisotropic data (#4162)
+ + Fixed `skimage.exposure.adjust_gamma`,
+ `skimage.exposure.adjust_log`, and
+ `skimage.exposure.adjust_sigmoid` such that when provided with a
+ 1 by 1 ndarray, it returns 1 by 1 ndarrays and not single number
+ floats (#4169)
+ * Deprecations
+ + Parameter "neighbors" in `skimage.measure.convex_hull_object`
+ has been deprecated in favor of "connectivity" and will be
+ removed in version 0.18.0.
+ + The following functions are deprecated in favor of the
+ `skimage.metrics` module (#4025):
+ - `skimage.measure.compare_mse`
+ - `skimage.measure.compare_nrmse`
+ - `skimage.measure.compare_psnr`
+ - `skimage.measure.compare_ssim`
+ + The function `skimage.color.guess_spatial_dimensions` is
+ deprecated and will be removed in 0.18 (#4031)
+ + The argument "bc" in `skimage.segmentation.active_contour` is
+ deprecated.
+ + The function `skimage.data.load` is deprecated and will be
+ removed in 0.18 (#4061)
+ + The function `skimage.transform.match_histogram` is deprecated
+ in favor of `skimage.exposure.match_histogram` (#4107)
+ + The parameter "neighbors" of
+ `skimage.morphology.convex_hull_object` is deprecated.
+ + The `skimage.transform.randon_tranform` function will convert
+ input image of integer type to float by default in 0.18. To
+ preserve current behaviour, set the new argument
+ "preserve_range" to True. (#4131)
+ * For further documentation improvements and misc pull request see
+
https://github.com/scikit-image/scikit-image/blob/v0.16.x/doc/release/release_0.16.rst
+
+-------------------------------------------------------------------
Old:
----
fix_numpy_1_17.patch
fix_numpy_matrix_warning_test.patch
scikit-image-0.15.0.tar.gz
New:
----
scikit-image-0.16.2.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-scikit-image.spec ++++++
--- /var/tmp/diff_new_pack.C9rOKk/_old 2019-11-15 22:31:54.648082958 +0100
+++ /var/tmp/diff_new_pack.C9rOKk/_new 2019-11-15 22:31:54.672082948 +0100
@@ -19,17 +19,12 @@
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
%define skip_python2 1
Name: python-scikit-image
-Version: 0.15.0
+Version: 0.16.2
Release: 0
Summary: Collection of algorithms for image processing in Python
License: BSD-3-Clause
-Group: Productivity/Scientific/Other
-URL: http://scikit-image.org/
+URL: https://scikit-image.org/
Source0:
https://files.pythonhosted.org/packages/source/s/scikit-image/scikit-image-%{version}.tar.gz
-# PATCH-FEATURE-UPSTREAM fix_numpy_matrix_warning_test.patch --
gh#scikit-image/scikit-image#3869
-Patch0: fix_numpy_matrix_warning_test.patch
-# PATCH-Fix-UPSTREAM fix_numpy_1_17.patch -- gh#scikit-image/scikit-image#3992
-Patch1: fix_numpy_1_17.patch
BuildRequires: %{python_module Cython >= 0.23.4}
BuildRequires: %{python_module devel}
BuildRequires: %{python_module numpy-devel >= 1.11}
@@ -58,11 +53,12 @@
# SECTION test requirements
BuildRequires: %{python_module Pillow >= 2.1.0}
BuildRequires: %{python_module PyWavelets >= 0.4.0}
+BuildRequires: %{python_module imageio}
BuildRequires: %{python_module matplotlib >= 1.3.1}
BuildRequires: %{python_module networkx >= 1.8}
BuildRequires: %{python_module nose}
-BuildRequires: %{python_module pytest}
BuildRequires: %{python_module pytest-localserver}
+BuildRequires: %{python_module pytest}
# /SECTION
%python_subpackages
++++++ scikit-image-0.15.0.tar.gz -> scikit-image-0.16.2.tar.gz ++++++
/work/SRC/openSUSE:Factory/python-scikit-image/scikit-image-0.15.0.tar.gz
/work/SRC/openSUSE:Factory/.python-scikit-image.new.26869/scikit-image-0.16.2.tar.gz
differ: char 5, line 1
