Hello community, here is the log from the commit of package R-base for openSUSE:Factory checked in at 2019-12-12 23:20:06 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Comparing /work/SRC/openSUSE:Factory/R-base (Old) and /work/SRC/openSUSE:Factory/.R-base.new.4691 (New) ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "R-base" Thu Dec 12 23:20:06 2019 rev:70 rq:756062 version:unknown Changes: -------- --- /work/SRC/openSUSE:Factory/R-base/R-base.changes 2019-08-30 14:43:25.777408474 +0200 +++ /work/SRC/openSUSE:Factory/.R-base.new.4691/R-base.changes 2019-12-12 23:20:13.342202395 +0100 @@ -1,0 +2,153 @@ +Thu Dec 12 11:37:25 UTC 2019 - Detlef Steuer <[email protected]> + +- CHANGES IN R 3.6.2: + + NEW FEATURES: + + * runmed(x, *) gains a new option na.action determining _how_ to + handle NaN or NA in x. + + * dotchart() gains new options ann, xaxt, frame.plot and log. + + INSTALLATION on a UNIX-ALIKE: + + * Detection of the C stack direction has been moved from run-time + to configure: this is safer with LTO builds and allows the + detection to be overridden - see file config.site. + + * Source-code changes enable installation on platforms using gcc + -fno-common (the expected default for gcc 10.x). + + C-LEVEL FACILITIES: + + * installTrChar (which is nowadays is wrapped by installChar) is + defined in Rinternals.h. (Neither are part of the API.) + + PACKAGE INSTALLATION: + + * Header Rconfig.h contains the value of FC_LEN_T deduced at + installation which is used by the prototypes in headers + R_ext/BLAS.h and R_ext/Lapack.h but to avoid extensive breakage + this is only exposed when USE_FC_LEN_T is defined. + + If a package's C/C++ calls to BLAS/LAPACK allow for the 'hidden' + arguments used by most Fortran compilers to pass the lengths of + Fortran character arguments, define USE_FC_LEN_T and include + Rconfig.h (possibly _via_ R.h) before including R_ext/BLAS.h or + R_ext/Lapack.h. + + * A package with Fortran source code and perhaps C (but not C++) + sources can request for its shared object/DLL to be linked by the + Fortran compiler by including a line USE_FC_TO_LINK= in + src/Makevars[.win] and using $(SHLIB_OPENMP_FFLAGS) as part of + PKG_LIBS. + + The known reason for doing so is a package which uses Fortran + (only) OpenMP on a platform where the Fortran OpenMP runtime is + incompatible with the C one (e.g. gfortran 9.x with clang). + + UTILITIES: + + * R CMD check has a new option to mitigate checks leaving + files/directories in /tmp. See the 'R Internals' manual - this + is part of --as-cran. + + Windows: + + * The default standard for C++ in package installation is C++11 (as + it has been on other platforms where available since R 3.6.0: the + default toolchain on Windows was defaulting to C++98). + + DEPRECATED AND DEFUNCT: + + * Support for specifying C++98 in package installation is + deprecated. + + * Support in R CMD config for F77, FCPIFCPLAGS, CPP, CXXCPP and + CXX98 and similar is deprecated. (CPP is found from the system + make and may well not be set.) + + Use $CC -E and $CXX -E instead of CPP and CXXCPP. + + BUG FIXES: + + * runmed(x, *) when x contains missing values now works + consistently for both algorithm="Stuetzle" and "Turlach", and no + longer segfaults for "Turlach", as reported by Hilmar Berger. + + * apply(diag(3), 2:3, mean) now gives a helpful error message. + + * dgamma(x, shape, log=TRUE) now longer overflows to Inf for shape + < 1 and very small x, fixing PR#17577, reported by Jonathan + Rougier. + + * Buffer overflow in building error messages fixed. Reported by + Benjamin Tremblay. + + * options(str = .) is correctly initialized at package utils load + time, now. A consequence is that str() in scripts now is more + consistent to interactive use, e.g., when displaying function(**) + argument lists. + + * as.numeric(<call>) now gives correct error message. + + * Printing ls.str() no longer wrongly shows "<missing>" in rare + cases. + + * Auto-printing S4 objects no longer duplicates the object, for + faster speed and reduced memory consumption. Reported by Aaron + Lun. + + * pchisq(<LRG>, <LRG>, ncp=100) no longer takes practically forever + in some cases. Hence ditto for corresponding qchisq() calls. + + * x %% L for finite x no longer returns NaN when L is infinite, nor + suffers from cancellation for large finite L, thanks to Long Qu's + PR#17611. + + Analogously, x %/% L and L %/% x suffer less from cancellation + and return values corresponding to limits for large L. + + + * grepl(NA, *) now returns logical as documented. + + * options(warn=1e11) is an error now, instead of later leading to C + stack overflow because of infinite recursion. + + * R_tryCatch no longer transfers control for all conditions. + Reported and patch provided by Lionel Henry in PR#17617. + + * format(object.size(.), digits=NULL) now works, fixing PR#17628 + reported by Jonathan Carroll. + + * get_all_vars(f, d) now also works for cases, e.g. where d + contains a matrix. Reported by Simon Wood in 2009 and patch + provided by Ben Bolker in PR#13624. + + Additionally, it now also works when some variables are data + frames, fixing PR#14905, reported by Patrick Breheny. + + * barplot() could get spacings wrong if there were exactly two bars + PR#15522. Patch by Michael Chirico. + + * power.t.test() works in more cases when returning values of n + smaller than 2. + + * dotchart(*, pch=., groups=.) now works better. Reported by + Robert and confirmed by Nic Rochette in PR#16953. + + * canCoerce(obj, cl) no longer assumes length(class(obj)) == 1. + + * plot.formula(*, subset = *) now also works in a boundary case + reported by Robert Schlicht (TU Dresden). + + * readBin() and writeBin() of a rawConnection() now also work in + large cases, thanks to a report and proposal by Taeke Harkema in + PR#17665. + +------------------------------------------------------------------- +Thu Oct 17 12:34:46 UTC 2019 - Richard Brown <[email protected]> + +- Remove obsolete Groups tag (fate#326485) + +------------------------------------------------------------------- Old: ---- R-3.6.1.tar.bz2 New: ---- R-3.6.2.tar.bz2 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ ++++++ R-base.spec ++++++ --- /var/tmp/diff_new_pack.GPzW9h/_old 2019-12-12 23:20:14.074202330 +0100 +++ /var/tmp/diff_new_pack.GPzW9h/_new 2019-12-12 23:20:14.078202329 +0100 @@ -1,7 +1,7 @@ # # spec file for package R-base # -# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany. +# Copyright (c) 2019 SUSE LLC # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed @@ -25,7 +25,7 @@ %define release 1 Name: R-base -Version: 3.6.1 +Version: 3.6.2 Release: %release %define Rversion %{version} Source0: R-%{version}.tar.bz2 @@ -34,11 +34,10 @@ # PATCH-FIX-UPSTREAM Fix tre when wchar_t is unsigned int #Patch0: tre.patch -Url: http://www.r-project.org/ +URL: http://www.r-project.org/ Summary: R - statistics package (S-Plus like) License: GPL-2.0-only OR GPL-3.0-only -Group: Productivity/Scientific/Math BuildRoot: %{_tmppath}/%{name}-%{version}-build BuildRequires: bzip2 BuildRequires: cairo-devel @@ -164,7 +163,6 @@ %package -n R-base-devel Summary: Metapackage, requires R-core-devel, R-core-libs, R-Matrix-devel -Group: Development/Libraries/Other Version: %{Rversion} Release: %release Requires: R-Matrix-devel @@ -180,7 +178,6 @@ # R-core %package -n R-core Summary: The core components of R -Group: Development/Libraries/Other Version: %{Rversion} Release: %release @@ -338,7 +335,6 @@ # R-core-devel %package -n R-core-devel Summary: Libraries and include files for developing with R-base -Group: Development/Libraries/Other Provides: R-devel = %{version} Provides: R-devel-macros = %{version} Requires: R-base @@ -402,7 +398,6 @@ #R-core-libs %package -n R-core-libs Summary: R language libraries -Group: System/Libraries %description -n R-core-libs This package contains the files from R/lib to make their usage @@ -422,7 +417,6 @@ %package -n R-core-doc Summary: Package provides all documentation of R base. PDFs, man pages, info pages -Group: Documentation/Other %description -n R-core-doc This packages provides all documentation of R base. PDFs, man pages, info pages @@ -469,7 +463,6 @@ %package -n R-core-packages Summary: Metapackage, requires all core Packages -Group: Development/Libraries/Other Version: %{Rversion} Release: %release Requires: R-compiler @@ -495,7 +488,6 @@ %package -n R-compiler Summary: Package providing R-core packages R-compiler -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-compiler @@ -527,7 +519,6 @@ %package -n R-datasets Summary: Package providing R-core datasets in R-datasets -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-datasets @@ -548,7 +539,6 @@ %package -n R-grDevices Summary: Package providing R-core graphics devices in R-grDevices -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-grDevices @@ -602,7 +592,6 @@ %package -n R-graphics Summary: Package providing R-core graphics in R-graphics -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-graphics @@ -653,7 +642,6 @@ %package -n R-grid Summary: Package providing R-grid graphics in R-grid -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-grid @@ -699,7 +687,6 @@ %package -n R-methods Summary: Package providing R-methods -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-methods @@ -741,7 +728,6 @@ %package -n R-parallel Summary: Package providing R-parallel -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-parallel @@ -804,7 +790,6 @@ %package -n R-splines Summary: Package providing R-splines -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-splines @@ -848,7 +833,6 @@ %package -n R-stats Summary: Package providing R-stats -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-stats @@ -898,7 +882,6 @@ # stats4 %package -n R-stats4 Summary: Package providing R-stats4 -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-stats4 @@ -933,7 +916,6 @@ %package -n R-tcltk Summary: Package providing R-tcltk -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-tcltk @@ -979,7 +961,6 @@ # tools %package -n R-tools Summary: Package providing R-tools -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-tools @@ -1026,7 +1007,6 @@ %package -n R-utils Summary: Package providing R-utils -Group: Development/Libraries/Other Requires: R-base = %{version} %description -n R-utils @@ -1070,7 +1050,6 @@ %package -n R-recommended-packages Summary: Metapackage, requires all recommended Packages -Group: Development/Libraries/Other Version: %{Rversion} Release: %release Requires: R-KernSmooth @@ -1097,8 +1076,7 @@ %package -n R-boot Summary: Package provides recommended R-boot -Group: Development/Libraries/Other -Version: 1.3.22 +Version: 1.3.23 Release: %release Requires: R-base @@ -1129,7 +1107,6 @@ %package -n R-class Summary: Package provides recommended R-class -Group: Development/Libraries/Other Version: 7.3.15 Release: %release Requires: R-base @@ -1161,7 +1138,6 @@ %package -n R-cluster Summary: Package provides recommended R-cluster -Group: Development/Libraries/Other Version: 2.1.0 Release: %release Requires: R-base @@ -1194,7 +1170,6 @@ %package -n R-codetools Summary: Package provides recommended R-codetools -Group: Development/Libraries/Other Version: 0.2.16 Release: %release Requires: R-base @@ -1216,8 +1191,7 @@ %package -n R-foreign Summary: Package provides recommended R-foreign -Group: Development/Libraries/Other -Version: 0.8.71 +Version: 0.8.72 Release: %release Requires: R-base @@ -1246,8 +1220,7 @@ %package -n R-KernSmooth Summary: Package provides recommended R-KernSmooth -Group: Development/Libraries/Other -Version: 2.23.15 +Version: 2.23.16 Release: %release Requires: R-base @@ -1275,7 +1248,6 @@ %package -n R-lattice Summary: Package provides recommended R-lattice -Group: Development/Libraries/Other Version: 0.20.38 Release: %release Requires: R-base @@ -1308,7 +1280,6 @@ %package -n R-MASS Summary: Package provides recommended R-MASS -Group: Development/Libraries/Other Version: 7.3.51 Release: %release Requires: R-base @@ -1341,8 +1312,7 @@ %package -n R-Matrix Summary: Package provides recommended R-Matrix -Group: Development/Libraries/Other -Version: 1.2.17 +Version: 1.2.18 Release: %release Requires: R-base @@ -1380,8 +1350,7 @@ %package -n R-Matrix-devel Summary: Package provides header files for recommended R-Matrix -Group: Development/Libraries/Other -Version: 1.2.17 +Version: 1.2.18 Release: %release Requires: R-Matrix Requires: R-base @@ -1399,8 +1368,7 @@ %package -n R-mgcv Summary: Package provides recommended R-mgcv -Group: Development/Libraries/Other -Version: 1.8.28 +Version: 1.8.31 Release: %release Requires: R-base @@ -1430,8 +1398,7 @@ %package -n R-nlme Summary: Package provides recommended R-nlme -Group: Development/Libraries/Other -Version: 3.1.140 +Version: 3.1.142 Release: %release Requires: R-base @@ -1464,7 +1431,6 @@ %package -n R-nnet Summary: Package provides recommended R-nnet -Group: Development/Libraries/Other Version: 7.3.12 Release: %release Requires: R-base @@ -1495,7 +1461,6 @@ %package -n R-rpart Summary: Package provides recommended R-rpart -Group: Development/Libraries/Other Version: 4.1.15 Release: %release Requires: R-base @@ -1528,7 +1493,6 @@ %package -n R-spatial Summary: Package provides recommended R-spatial -Group: Development/Libraries/Other Version: 7.3.11 Release: %release Requires: R-base @@ -1561,8 +1525,7 @@ %package -n R-survival Summary: Package provides recommended R-survival -Group: Development/Libraries/Other -Version: 2.44.1 +Version: 3.1.8 Release: %release Requires: R-base ++++++ R-3.6.1.tar.bz2 -> R-3.6.2.tar.bz2 ++++++ /work/SRC/openSUSE:Factory/R-base/R-3.6.1.tar.bz2 /work/SRC/openSUSE:Factory/.R-base.new.4691/R-3.6.2.tar.bz2 differ: char 11, line 1
