Hello community, here is the log from the commit of package bowtie2 for openSUSE:Leap:15.2 checked in at 2020-05-14 06:51:58 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Comparing /work/SRC/openSUSE:Leap:15.2/bowtie2 (Old) and /work/SRC/openSUSE:Leap:15.2/.bowtie2.new.2738 (New) ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "bowtie2" Thu May 14 06:51:58 2020 rev:2 rq:805393 version:2.3.5.1 Changes: -------- --- /work/SRC/openSUSE:Leap:15.2/bowtie2/bowtie2.changes 2020-02-16 18:29:37.674759070 +0100 +++ /work/SRC/openSUSE:Leap:15.2/.bowtie2.new.2738/bowtie2.changes 2020-05-14 06:52:00.167770330 +0200 @@ -1,0 +2,12 @@ +Tue May 12 16:02:17 UTC 2020 - Guillaume GARDET <[email protected]> + +- Fix aarch64 build with: + * simde sources + * export POPCNT_CAPABILITY=0 + +------------------------------------------------------------------- +Sat Nov 30 02:16:08 UTC 2019 - Atri Bhattacharya <[email protected]> + +- Use %%license to install LICENSE file. + +------------------------------------------------------------------- New: ---- _service simde-0.0~git20190101.422ed9c.obscpio simde.obsinfo ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ ++++++ bowtie2.spec ++++++ --- /var/tmp/diff_new_pack.EGzOaB/_old 2020-05-14 06:52:01.435773063 +0200 +++ /var/tmp/diff_new_pack.EGzOaB/_new 2020-05-14 06:52:01.439773071 +0200 @@ -1,7 +1,7 @@ # # spec file for package bowtie2 # -# Copyright (c) 2017 SUSE LINUX GmbH, Nuernberg, Germany. +# Copyright (c) 2020 SUSE LLC # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed @@ -12,18 +12,22 @@ # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. -# Please submit bugfixes or comments via http://bugs.opensuse.org/ +# Please submit bugfixes or comments via https://bugs.opensuse.org/ # +%ifarch aarch64 +%define _lto_cflags %{nil} +%endif Name: bowtie2 Version: 2.3.5.1 Release: 0 Summary: Fast and memory-efficient short read aligner -License: GPL-3.0 +License: GPL-3.0-only Group: Productivity/Scientific/Other -Url: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml +URL: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Source0: https://github.com/BenLangmead/bowtie2/archive/v%{version}.tar.gz#/%{name}-%{version}.tar.gz +Source1: simde-0.0~git20190101.422ed9c.tar.xz BuildRequires: gcc-c++ BuildRequires: tbb-devel BuildRequires: zlib-devel @@ -40,8 +44,16 @@ %prep %setup -q +%setup -q -b 1 +pushd third_party +rmdir simde +ln -s ../../simde-*/ simde +popd %build +%ifarch aarch64 +export POPCNT_CAPABILITY=0 +%endif make %{?_smp_mflags} RELEASE_FLAGS="%{optflags}" %install @@ -49,11 +61,12 @@ # CONVERT env HASHBANGS TO USE DIRECT EXECUTABLE perlbin=`which perl` -sed -i "s:/usr/bin/env perl:${perlbin}:" %{buildroot}%{_bindir}/bowtie2 -sed -i "s:/usr/bin/env python:/usr/bin/python:" %{buildroot}%{_bindir}/bowtie2-{build,inspect} +sed -i "s:%{_bindir}/env perl:${perlbin}:" %{buildroot}%{_bindir}/bowtie2 +sed -i "s:%{_bindir}/env python:%{_bindir}/python:" %{buildroot}%{_bindir}/bowtie2-{build,inspect} %files -%doc AUTHORS LICENSE MANUAL NEWS TUTORIAL VERSION +%doc AUTHORS MANUAL NEWS TUTORIAL VERSION +%license LICENSE %{_bindir}/bowtie2 %{_bindir}/bowtie2-align-l %{_bindir}/bowtie2-align-s ++++++ _service ++++++ <services> <service name="obs_scm" mode="disabled"> <param name="url">https://github.com/nemequ/simde</param> <param name="scm">git</param> <param name="revision">422ed9cc55c88feaa0412e9f1511e10e60fd39ba</param> <param name="versionformat">0.0~git%cd.%h</param> </service> <service mode="buildtime" name="tar" /> <service mode="buildtime" name="recompress"> <param name="file">*.tar</param> <param name="compression">xz</param> </service> </services> ++++++ simde.obsinfo ++++++ name: simde version: 0.0~git20190101.422ed9c mtime: 1546378654 commit: 422ed9cc55c88feaa0412e9f1511e10e60fd39ba
