Hello community,
here is the log from the commit of package python-photutils for
openSUSE:Factory checked in at 2020-09-25 16:37:00
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-photutils (Old)
and /work/SRC/openSUSE:Factory/.python-photutils.new.4249 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-photutils"
Fri Sep 25 16:37:00 2020 rev:10 rq:837400 version:1.0.1
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-photutils/python-photutils.changes
2020-09-23 18:48:14.053753733 +0200
+++
/work/SRC/openSUSE:Factory/.python-photutils.new.4249/python-photutils.changes
2020-09-25 16:37:41.924218639 +0200
@@ -1,0 +2,8 @@
+Fri Sep 25 11:41:40 UTC 2020 - Benjamin Greiner <[email protected]>
+
+- Update to Version 1.0.1
+ Bug Fixes
+ * photutils.psf
+ Fixed checks on oversampling factors. [#1086]
+
+-------------------------------------------------------------------
Old:
----
photutils-1.0.0.tar.gz
New:
----
photutils-1.0.1.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-photutils.spec ++++++
--- /var/tmp/diff_new_pack.ibgAXS/_old 2020-09-25 16:37:42.452219107 +0200
+++ /var/tmp/diff_new_pack.ibgAXS/_new 2020-09-25 16:37:42.452219107 +0200
@@ -19,7 +19,7 @@
%define skip_python2 1
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
Name: python-photutils
-Version: 1.0.0
+Version: 1.0.1
Release: 0
Summary: An Astropy package for photometry
License: BSD-3-Clause
++++++ photutils-1.0.0.tar.gz -> photutils-1.0.1.tar.gz ++++++
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/photutils-1.0.0/CHANGES.rst
new/photutils-1.0.1/CHANGES.rst
--- old/photutils-1.0.0/CHANGES.rst 2020-09-23 03:18:06.000000000 +0200
+++ new/photutils-1.0.1/CHANGES.rst 2020-09-25 05:01:42.000000000 +0200
@@ -1,5 +1,16 @@
-1.0 (2020-09-22)
-----------------
+1.0.1 (2020-09-24)
+------------------
+
+Bug Fixes
+^^^^^^^^^
+
+- ``photutils.psf``
+
+ - Fixed checks on ``oversampling`` factors. [#1086]
+
+
+1.0.0 (2020-09-22)
+------------------
General
^^^^^^^
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/photutils-1.0.0/PKG-INFO new/photutils-1.0.1/PKG-INFO
--- old/photutils-1.0.0/PKG-INFO 2020-09-23 03:48:35.553023800 +0200
+++ new/photutils-1.0.1/PKG-INFO 2020-09-25 05:31:27.511860600 +0200
@@ -1,6 +1,6 @@
Metadata-Version: 2.1
Name: photutils
-Version: 1.0.0
+Version: 1.0.1
Summary: An Astropy package for source detection and photometry
Home-page: https://github.com/astropy/photutils
Author: Photutils Developers
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/photutils-1.0.0/docs/dev/releasing.rst
new/photutils-1.0.1/docs/dev/releasing.rst
--- old/photutils-1.0.0/docs/dev/releasing.rst 1970-01-01 01:00:00.000000000
+0100
+++ new/photutils-1.0.1/docs/dev/releasing.rst 2020-09-25 04:25:59.000000000
+0200
@@ -0,0 +1,170 @@
+.. doctest-skip-all
+
+****************************
+Package Release Instructions
+****************************
+
+This document outlines the steps for releasing Photutils to PyPI. This
+process currently requires admin-level access to the Photutils GitHub
+repository, as it relies on the ability to commit to master directly. It
+also requires a PyPI account with admin-level access for Photutils.
+
+These instructions assume the name of the git remote for the repo is
+called ``upstream``.
+
+#. Ensure Travis-CI and any other continuous integration is passing
+ for the branch you are going to release. Also, ensure that Read the
+ Docs builds are passing.
+
+#. Locally run the tests using ``tox`` to do thorough tests in isolated
+ environments::
+
+ tox -e test-alldeps -- --remote-data=any
+ tox -e build_docs
+ tox -e linkcheck
+
+#. Update the ``CHANGES.rst`` file to make sure that all the changes are
+ listed and update the release date, which should currently be set to
+ ``unreleased``, to the current date in ``yyyy-mm-dd`` format. Then
+ commit the changes::
+
+ git add CHANGES.rst
+ git commit -m'Finalizing changelog for version <X.Y.Z version>'
+
+#. Remove any untracked files (WARNING: this will permanently remove any
+ files that have not been previously committed, so make sure that you
+ don't need to keep any of these files)::
+
+ git clean -dfx
+
+#. Make sure the source distribution doesn't inherit limited permissions
+ from your default umask::
+
+ umask 0022
+ chmod -R a+Xr .
+
+#. Update the package version number to the version you’re about to
+ release by creating an annotated git tag (optionally signing with the
+ ``-s`` option)::
+
+ git tag -a <X.Y.Z version> -m'<X.Y.Z version>'
+ git show <X.Y.Z version> # show the tag
+ git tag # show all tags
+
+#. Check out the release commit::
+
+ git checkout <X.Y.Z version>
+
+#. Generate the source distribution tar file by first making sure the
+ `pep517 <https://pypi.org/project/pep517/>`_ package is installed and
+ up to date::
+
+ pip install pep517 --upgrade
+
+ then creating the source distribution with::
+
+ python -m pep517.build --source .
+
+#. Run tests on the generated source distribution by going inside the
+ ``dist`` directory, expanding the tar file, going inside the expanded
+ directory, and running the tests with::
+
+ cd dist
+ tar xvfz <file>.tar.gz
+ cd <file>
+ tox -e test-alldeps -- --remote-data=any
+ tox -e build_docs
+
+ Optionally, install and test the source distribution in a virtual
+ environment::
+
+ <install and activate virtual environment>
+ pip install -e .[all,test]
+ pytest --remote-data=any
+
+ or::
+
+ <install and activate virtual environment>
+ pip install ./<file>.tar.gz[all,test]
+ cd <any-directory-outside-of-photutils-source>
+ python
+ >>> import photutils
+ >>> photutils.__version__
+ >>> photutils.test(remote_data=True)
+
+#. Go back to the package root directory and remove the generated files
+ with::
+
+ git clean -dfx
+
+#. Generate the source distribution and upload it to PyPI::
+
+ python -m pep517.build --source .
+ twine check dist/*
+ twine upload dist/*
+
+ Check that the entry on PyPI is correct, and that the tarfile is
+ present.
+
+#. Go back to the master branch::
+
+ git checkout master
+
+#. Push the released tag to the upstream repo::
+
+ git push upstream <X.Y.Z>
+
+#. Add a new section to ``CHANGES.rst`` for the next x.y.z version,
+ with a single entry ``No changes yet``, e.g.,::
+
+ x.y.z (unreleased)
+ ------------------
+
+ - No changes yet
+
+ Then commit the changes and push to the upstream repo::
+
+ git add CHANGES.rst
+ git commit -m'Add version <x.y.z next_version> to the changelog'
+ git push upstream master
+
+#. Create a GitHub Release
+ (https://github.com/astropy/photutils/releases) by clicking on
+ "Draft a new release", select the tag of the released version, add
+ a release title with the released version, and add a description
+ of "See ```CHANGES.rst``` for release notes.". Then click "Publish
+ release". This step will trigger an automatic update of the package
+ on Zenodo (see below).
+
+#. Close the GitHub Milestone
+ (https://github.com/astropy/photutils/milestones) for the released
+ version and open a new Milestone for the next release.
+
+#. Go to Read the Docs
+ (https://readthedocs.org/projects/photutils/versions/) and check that
+ the "stable" docs correspond to the new released version. Deactivate
+ any older released versions (i.e., uncheck "Active").
+
+#. Check that Zenodo is updated with the released version
+ (https://doi.org/10.5281/zenodo.596036). Zenodo is already configured
+ to automatically update with a new published GitHub Release (see
+ above).
+
+#. After the release, the conda-forge bot (``regro-cf-autotick-bot``)
+ will automatically create a pull request on
+ https://github.com/conda-forge/photutils-feedstock. The ``meta.yaml``
+ recipe may need to be edited with updated dependencies. Modify (if
+ necessary), review, and merge the PR to create the conda-forge
+ package (https://anaconda.org/conda-forge/photutils). The Astropy
+ conda channel (https://anaconda.org/astropy/photutils) will
+ automatically mirror the package from conda-forge.
+
+#. Build wheels and upload them to PyPI. The
+ Photutils wheels are currently built using
+ https://github.com/larrybradley/photutils-wheel-forge. Once the
+ wheels have been built, they are uploaded as artifacts in Azure
+ Pipelines. Download the wheels from Azure Pipelines and upload them
+ to PyPI::
+
+ python get_wheels.py
+ twine upload wheelhouse/*.whl
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/photutils-1.0.0/docs/index.rst
new/photutils-1.0.1/docs/index.rst
--- old/photutils-1.0.0/docs/index.rst 2020-09-23 03:18:06.000000000 +0200
+++ new/photutils-1.0.1/docs/index.rst 2020-09-25 04:25:59.000000000 +0200
@@ -7,6 +7,10 @@
h1 {display:none;}
</style>
+.. |br| raw:: html
+
+ <div style="min-height:0.1em;"></div>
+
*********
Photutils
*********
@@ -26,11 +30,14 @@
astronomical sources. It is an open source Python package and is
licensed under a :ref:`3-clause BSD license <photutils_license>`.
+|br|
+
.. Important::
If you use Photutils for a project that leads to a publication,
whether directly or as a dependency of another package, please
include an :doc:`acknowledgment and/or citation <citation>`.
+|br|
Getting Started
===============
@@ -69,15 +76,27 @@
datasets.rst
utils.rst
+
+Developer Documentation
+=======================
+
+.. toctree::
+ :maxdepth: 1
+
+ dev/releasing.rst
+
+
.. toctree::
:hidden:
test_function.rst
+|br|
+
.. note::
Like much astronomy software, Photutils is an evolving package.
The developers make an effort to maintain backwards compatibility,
but at times the API may change if there is a benefit to doing so.
If there are specific areas you think API stability is important,
- please let us know as part of the development process!
+ please let us know as part of the development process.
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/photutils-1.0.0/photutils/CITATION.rst
new/photutils-1.0.1/photutils/CITATION.rst
--- old/photutils-1.0.0/photutils/CITATION.rst 2020-09-22 06:24:35.000000000
+0200
+++ new/photutils-1.0.1/photutils/CITATION.rst 2020-09-25 04:26:17.000000000
+0200
@@ -13,29 +13,52 @@
where (Bradley et al. 20XX) is a citation to the `Zenodo record
<https://doi.org/10.5281/zenodo.596036>`_ of the Photutils version
-that was used. We also encourage citations in the main text wherever
+that was used. We also encourage citations in the main text wherever
appropriate.
-For example, for Photutils v0.6 one would cite Bradley et al. 2019
-with the BibTeX entry (https://zenodo.org/record/2533376/export/hx):
+All Photutils versions and citation formats can be found at
+https://doi.org/10.5281/zenodo.596036. For example, for Photutils
+v1.0.0 one would cite Bradley et al. 2020 with the BibTeX entry
+(https://zenodo.org/record/4044744/export/hx):
.. code-block:: text
- @misc{Bradley_2019_2533376,
- author = {Larry Bradley and Brigitta Sip{\H o}cz and Thomas Robitaille and
- Erik Tollerud and Z\`e Vin{\'{\i}}cius and Christoph Deil and
- Kyle Barbary and Hans Moritz G{\"u}nther and Mihai Cara and
- Ivo Busko and Simon Conseil and Michael Droettboom and
- Azalee Bostroem and E. M. Bray and Lars Andersen Bratholm and
- Tom Wilson and Matt Craig and Geert Barentsen and
- Sergio Pascual and Axel Donath and Johnny Greco and
- Gabriel Perren and P. L. Lim and Wolfgang Kerzendorf},
- title = {astropy/photutils: v0.6},
- month = jan,
- year = 2019,
- doi = {10.5281/zenodo.2533376},
- url = {https://doi.org/10.5281/zenodo.2533376}
- }
-
-All Photutils versions (and more citation formats) can be found at
-https://doi.org/10.5281/zenodo.596036.
+ @software{larry_bradley_2020_4044744,
+ author = {Larry Bradley and
+ Brigitta Sipőcz and
+ Thomas Robitaille and
+ Erik Tollerud and
+ Zé Vinícius and
+ Christoph Deil and
+ Kyle Barbary and
+ Tom J Wilson and
+ Ivo Busko and
+ Hans Moritz Günther and
+ Mihai Cara and
+ Simon Conseil and
+ Azalee Bostroem and
+ Michael Droettboom and
+ E. M. Bray and
+ Lars Andersen Bratholm and
+ P. L. Lim and
+ Geert Barentsen and
+ Matt Craig and
+ Sergio Pascual and
+ Gabriel Perren and
+ Johnny Greco and
+ Axel Donath and
+ Miguel de Val-Borro and
+ Wolfgang Kerzendorf and
+ Yoonsoo P. Bach and
+ Benjamin Alan Weaver and
+ Francesco D'Eugenio and
+ Harrison Souchereau and
+ Leonardo Ferreira},
+ title = {astropy/photutils: 1.0.0},
+ month = sep,
+ year = 2020,
+ publisher = {Zenodo},
+ version = {1.0.0},
+ doi = {10.5281/zenodo.4044744},
+ url = {https://doi.org/10.5281/zenodo.4044744}
+ }
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/photutils-1.0.0/photutils/__init__.py
new/photutils-1.0.1/photutils/__init__.py
--- old/photutils-1.0.0/photutils/__init__.py 2020-09-22 06:24:35.000000000
+0200
+++ new/photutils-1.0.1/photutils/__init__.py 2020-09-25 04:56:53.000000000
+0200
@@ -28,10 +28,10 @@
citation_file = os.path.join(os.path.dirname(__file__), 'CITATION.rst')
with open(citation_file, 'r') as citation:
- refs = citation.read().split('@misc')[1:]
+ refs = citation.read().split('@software')[1:]
if len(refs) == 0:
return ''
- bibtexreference = "@misc{0}".format(refs[0])
+ bibtexreference = "@software{0}".format(refs[0])
return bibtexreference
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/photutils-1.0.0/photutils/psf/models.py
new/photutils-1.0.1/photutils/psf/models.py
--- old/photutils-1.0.0/photutils/psf/models.py 2020-09-22 22:01:02.000000000
+0200
+++ new/photutils-1.0.1/photutils/psf/models.py 2020-09-25 02:08:19.000000000
+0200
@@ -108,7 +108,7 @@
the `compute_interpolator` method. See `compute_interpolator`
for more details.
- oversampling : float or tuple of two floats, optional
+ oversampling : int or tuple of two int, optional
The oversampling factor(s) of the model in the ``x`` and ``y``
directions. If ``oversampling`` is a scalar it will be treated
as being the same in both x and y; otherwise a tuple of two
@@ -245,20 +245,25 @@
return self._oversampling
def _set_oversampling(self, value):
- """
- This is a private method because it's used in the initializer by
- the ``oversampling``
- """
+ value = np.atleast_1d(value)
- try:
- value = np.atleast_1d(value).astype(float)
- if len(value) == 1:
- value = np.repeat(value, 2)
- except ValueError:
- raise ValueError('Oversampling factors must be float')
+ if np.any(~np.isfinite(value)):
+ raise ValueError('Oversampling factor must be a finite value')
if np.any(value <= 0):
- raise ValueError('Oversampling factors must be greater than 0')
+ raise ValueError('Oversampling factor must be greater than 0')
+
+ if len(value) == 1:
+ value = np.repeat(value, 2)
+ if len(value) != 2:
+ raise ValueError('Oversampling factor must have 1 or 2 '
+ 'elements')
+ if value.ndim != 1:
+ raise ValueError('Oversampling factor must be 1D')
+
+ value_int = value.astype(int)
+ if np.any(value_int != value): # e.g., 2.0 is OK, 2.1 is not
+ raise ValueError('Oversampling elements must be integers')
self._oversampling = value
@@ -490,6 +495,8 @@
xi = np.asarray(x) - x_0
yi = np.asarray(y) - y_0
+ xi = xi.astype(float)
+ yi = yi.astype(float)
xi += self._x_origin
yi += self._y_origin
@@ -601,18 +608,6 @@
"normalization constant. Normalization "
"constant will be set to 1.", NonNormalizable)
- def _set_oversampling(self, value):
- try:
- value = np.atleast_1d(value).astype(int)
- if len(value) == 1:
- value = np.repeat(value, 2)
- except ValueError:
- raise ValueError('Oversampling factor must be a scalar')
- if np.any(value <= 0):
- raise ValueError('Oversampling factor must be greater than 0')
-
- self._oversampling = value
-
def normalized_data(self):
"""
Overloaded dummy function that also returns self._data, as the
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/photutils-1.0.0/photutils/psf/tests/test_epsf.py
new/photutils-1.0.1/photutils/psf/tests/test_epsf.py
--- old/photutils-1.0.0/photutils/psf/tests/test_epsf.py 2020-09-22
22:01:02.000000000 +0200
+++ new/photutils-1.0.1/photutils/psf/tests/test_epsf.py 2020-09-25
02:08:19.000000000 +0200
@@ -176,13 +176,14 @@
EPSFModel(data, flux=None)
data[2, 2] = 1
- for oversampling in [np.NaN, 'a', -1, [-2, 4]]:
+ for oversampling in [-1, [-2, 4], (1, 4, 8), ((1, 2), (3, 4)),
+ np.ones((2, 2, 2)), 2.1, np.nan, (1, np.inf)]:
with pytest.raises(ValueError):
EPSFModel(data, oversampling=oversampling)
- for origin in ['a', (1, 2, 3)]:
- with pytest.raises(TypeError):
- EPSFModel(data, origin=origin)
+ origin = (1, 2, 3)
+ with pytest.raises(TypeError):
+ EPSFModel(data, origin=origin)
@pytest.mark.skipif('not HAS_SCIPY')
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/photutils-1.0.0/photutils/psf/tests/test_models.py
new/photutils-1.0.1/photutils/psf/tests/test_models.py
--- old/photutils-1.0.0/photutils/psf/tests/test_models.py 2020-09-22
06:24:35.000000000 +0200
+++ new/photutils-1.0.1/photutils/psf/tests/test_models.py 2020-09-25
02:08:19.000000000 +0200
@@ -103,7 +103,7 @@
def test_oversampling_inputs(self):
data = np.arange(30).reshape(5, 6)
- for oversampling in [4, (3, 3), (3, 4), '1', ('1', '2')]:
+ for oversampling in [4, (3, 3), (3, 4)]:
fim = FittableImageModel(data, oversampling=oversampling)
if not hasattr(oversampling, '__len__'):
_oversamp = float(oversampling)
@@ -111,9 +111,10 @@
_oversamp = tuple(float(o) for o in oversampling)
assert np.all(fim._oversampling == _oversamp)
- for oversampling in ['a', ('b', 2), (-1, 3), -1]:
+ for oversampling in [-1, [-2, 4], (1, 4, 8), ((1, 2), (3, 4)),
+ np.ones((2, 2, 2)), 2.1, np.nan, (1, np.inf)]:
with pytest.raises(ValueError):
- fim = FittableImageModel(data, oversampling=oversampling)
+ FittableImageModel(data, oversampling=oversampling)
class TestGriddedPSFModel:
@@ -345,7 +346,7 @@
dict(xname='x_0', yname='y_0', fluxname=None, renormalize_psf=True),
dict(xname='x_0', yname='y_0', fluxname=None, renormalize_psf=False),
dict(xname=None, yname=None, fluxname=None, renormalize_psf=False)
- ])
+ ])
def test_prfadapter_integrates(self, adapterkwargs):
from scipy.integrate import dblquad
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/photutils-1.0.0/photutils/version.py
new/photutils-1.0.1/photutils/version.py
--- old/photutils-1.0.0/photutils/version.py 2020-09-23 03:48:34.000000000
+0200
+++ new/photutils-1.0.1/photutils/version.py 2020-09-25 05:31:26.000000000
+0200
@@ -5,4 +5,4 @@
from setuptools_scm import get_version
version = get_version(root='..', relative_to=__file__)
except Exception:
- version = '1.0.0'
+ version = '1.0.1'
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/photutils-1.0.0/photutils.egg-info/PKG-INFO
new/photutils-1.0.1/photutils.egg-info/PKG-INFO
--- old/photutils-1.0.0/photutils.egg-info/PKG-INFO 2020-09-23
03:48:34.000000000 +0200
+++ new/photutils-1.0.1/photutils.egg-info/PKG-INFO 2020-09-25
05:31:26.000000000 +0200
@@ -1,6 +1,6 @@
Metadata-Version: 2.1
Name: photutils
-Version: 1.0.0
+Version: 1.0.1
Summary: An Astropy package for source detection and photometry
Home-page: https://github.com/astropy/photutils
Author: Photutils Developers
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/photutils-1.0.0/photutils.egg-info/SOURCES.txt
new/photutils-1.0.1/photutils.egg-info/SOURCES.txt
--- old/photutils-1.0.0/photutils.egg-info/SOURCES.txt 2020-09-23
03:48:35.000000000 +0200
+++ new/photutils-1.0.1/photutils.egg-info/SOURCES.txt 2020-09-25
05:31:27.000000000 +0200
@@ -62,6 +62,7 @@
docs/_templates/autosummary/base.rst
docs/_templates/autosummary/class.rst
docs/_templates/autosummary/module.rst
+docs/dev/releasing.rst
docs/psf_spec/background_estimator.rst
docs/psf_spec/block_diagram.png
docs/psf_spec/block_template.rst
