Hello community, here is the log from the commit of package R-base for openSUSE:Factory checked in at 2014-11-02 16:46:28 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Comparing /work/SRC/openSUSE:Factory/R-base (Old) and /work/SRC/openSUSE:Factory/.R-base.new (New) ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "R-base" Changes: -------- --- /work/SRC/openSUSE:Factory/R-base/R-base.changes 2014-07-11 06:46:58.000000000 +0200 +++ /work/SRC/openSUSE:Factory/.R-base.new/R-base.changes 2014-11-02 16:46:54.000000000 +0100 @@ -1,0 +2,208 @@ +Fri Oct 31 11:59:25 UTC 2014 - detlef.ste...@gmx.de + +- Upstream release 3.1.2 +- Most important + CHANGES IN R 3.1.2: + + NEW FEATURES: + + * embedFonts() now defaults to format = "ps2write" for .ps and .eps + files. This is available in Ghostscript 9.x (since 2010) whereas + the previous default, format = "pswrite", was removed in + Ghostscript 9.10. + + * For consistency with [dpqr]norm(), [dp]lnorm(sdlog = 0) model a + point mass at exp(mulog) rather than return NaN (for an error). + + * capabilities() now reports if ICU is compiled in for use for + collation (it is only actually used if a suitable locale is set + for collation, and never for a C locale). + + * (OS X only.) Package tcltk checks when loaded if it is linked + against the CRAN X11-based Tcl/Tk and if so that the Tcl/Tk + component and the X11 libraries are installed. This allows more + informative error messages to be given advising the installation + of the missing component or of XQuartz. + + The X11() device and X11-based versions of the data editor and + viewer (invoked by edit() and View() for data frames and matrices + from command-line R) check that the X11 libraries are installed + and if not advises installing XQuartz. + + * icuSetCollate() allows locale = "default", and locale = "none" to + use OS services rather than ICU for collation. + + Environment variable R_ICU_LOCALE can be used to set the default + ICU locale, in case the one derived from the OS locale is + inappropriate (this is currently necessary on Windows). + + * New function icuGetCollate() to report on the ICU collation + locale in use (if any). + + * utils::URLencode() was updated to use unreserved and reserved + characters from RFC 3986, <URL: + http://tools.ietf.org/html/rfc3986>, instead of RFC 1738. + + * unique(warnings()) and c(warnings()) are now supported. + + * The Bioconductor 'version' used by setRepositories() now defaults + to 3.0. (It can be set at runtime _via_ environment variable + R_BIOC_VERSION.) + + INSTALLATION and INCLUDED SOFTWARE: + + * The configure script reports on the more important + capabilities/options which will not be compiled in. + + More types of external BLAS are recognized by name in that + report. + + * When building R as a shared library, the -L${R_HOME}/lib${R_ARCH} + flag is placed earlier in the link commands used during + installation and when packages are installed: this helps ensure + that the current build has priority if an R shared library has + already been installed by e.g. install-libR in a library + mentioned in LDFLAGS (and not in 'your system's library + directory' as documented). (Wish of PR#15790.) + + * LaTeX package upquote is no longer required for R's use of + inconsolata. + + * (Windows only) If both 32 and 64 bit versions of R are installed, + the bin/R.exe and bin/Rscript.exe executables now run 64 bit R. + (To run 32 bit R, overwrite these files with copies of + bin/i386/Rfe.exe.) + + UTILITIES: + + * Running R CMD check with _R_CHECK_DEPENDS_ONLY_ true now makes + the VignetteBuilder packages available even if they are listed in + Suggests, since they are needed to recognise and process + non-Sweave vignettes. + + * R CMD check now reports empty importFrom declarations in a + NAMESPACE file, as these are common errors (writing + importFrom(Pkg) where import(Pkg) was intended). + + * R CMD check now by default checks code usage directly on the + package namespace without loading and attaching the package and + its suggests and enhances. For good practice with packages in + the Suggests field, see SS1.1.3.1 of 'Writing R Extensions'. For + use of lazy-data objects in the package's own code, see ?data. + + BUG FIXES: + + * dmultinom() did not handle non-finite probabilities correctly. + + * prettyNum(x, zero.print=*) now also works when x contains NAs. + + * A longstanding bug exhibited by nlminb() on Windows was traced to + a compiler bug in gcc 4.6.3; a workaround has been put in place. + (PR#15244 and PR#15914). + + * Rendering of \command in HTML versions of help pages has been + improved: this is particularly evident on the help page for + INSTALL. + + * as.hexmode(x) and as.octmode(x) now behave correctly for some + numeric x, e.g., c(NA, 1) or c(1, pi). + + * drop1() failed if the scope argument had no variables to drop. + (PR#15935) + + * edit() (and hence fix()) failed if an object had a non-character + attribute named "source" (an attribute that had been used in R + prior to version 2.14.0). + + * callGeneric() could fail if the generic had ... as a formal + argument. (PR#15937). + + * Forking in package parallel called C entry point exit in the + child. This was unsafe (_exit should have been called), and + could flush stdin of the main R process (seen most often on + Solaris). + + As good practice, stdout is now flushed before forking a child. + + * R objects such as list(`a\b` = 1) now print correctly. + + * getAnywhere("C_pbinom") now returns correctly a single object + (rather than unlisting it). + + * The confint() method for nls() fits failed it these has specified + parameter limits despite using an algorithm other than "port". + (PR#15960) + + * Subclassing an S4 class failed if the class required arguments to + the generator, through its initialize() method. + + * removeSource() did not properly handle expressions containing + arguments that were supplied as missing, e.g. x[i,]. (PR#15957) + + * as.environment(list()) now works, and as.list() of such an + environment is now the same as list(). + + * Several tcltk functions failed when run in unusual environments. + (PR#15970) + + * options(list()) now works (trivially). (PR#15979) + + * merge(<dendrogram>, ..) now works correctly for two `independent' + dendrograms (PR#15648), and still compatibly via adjust = "auto" + e.g. for two branches of an existing dendrogram. + + * The plot method for "hclust" objects gets an optional argument + check; When that is true (the default) it checks more carefully + for valid input. + + * (Windows only) If a user chose to install 64 bit R but not 32 bit + R, the bin/R and bin/Rscript executables failed to run. + (PR#15981) + + * Various possible buffer overruns have been prevented, and missed + memory protection added. (PR#15990) + + * Rscript no longer passes --args to R when there are no extra + ("user") arguments. + + * objects like getClass("refClass")@prototype now print() and str() + without error. + + * identical() now also looks at the S4 bit. + + * hist(x, breaks) is more robust in adding a small fuzz to few + breaks when some are very large. (PR#15988) + + * sub() and gsub() did not handle regular expressions like "\s{2,}" + properly if the text contained NA or non-ascii elements in a + UTF-8 locale. Part of this was due to a bug in the TRE library. + (PR#16009) + + * RShowDoc("NEWS") now displays the PDF version. + + * Matrices and arrays with last dimension zero did not print at all + or incompletely. (PR#16012) + + * plot.histogram() and hence hist() now respect the xaxs, yaxs and + lab graphics parameters. (PR#16021) + + * bw.SJ(x) and other bw.*() no longer segfault when x contains + non-finite values. (PR#16024) + + * R CMD Rd2pdf unintentionally ignored its --os option. + + * The internal method of download.file() was not reporting file + sizes and progress correctly on files larger than 2GB (inherited + from libxml2). This is corrected for 64-bit builds (32-bit + platforms may not support such files, but where possible will be ++++ 11 more lines (skipped) ++++ between /work/SRC/openSUSE:Factory/R-base/R-base.changes ++++ and /work/SRC/openSUSE:Factory/.R-base.new/R-base.changes Old: ---- R-3.1.1.tar.bz2 New: ---- R-3.1.2.tar.bz2 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ ++++++ R-base.spec ++++++ --- /var/tmp/diff_new_pack.JnGW8g/_old 2014-11-02 16:46:55.000000000 +0100 +++ /var/tmp/diff_new_pack.JnGW8g/_new 2014-11-02 16:46:55.000000000 +0100 @@ -18,7 +18,7 @@ Name: R-base %define release 1 -Version: 3.1.1 +Version: 3.1.2 Release: %release Source: R-%{version}.tar.bz2 #Source: http://cran.r-project.org/src/base/R-2/R-%%{version}.tar.gz @@ -84,15 +84,15 @@ Requires: xorg-x11-fonts-75dpi Provides: R = %{version} -Provides: R-KernSmooth = 2.23.12 -Provides: R-MASS = 7.3.33 +Provides: R-KernSmooth = 2.23.13 +Provides: R-MASS = 7.3.35 Provides: R-Matrix = 1.1.4 #Provides: R-base = %%{version} # implicitly provided Obsoletes: R-Matrix < 1.1.4 -Provides: R-boot = 1.3.11 -Provides: R-class = 7.3.10 -Provides: R-cluster = 1.15.2 -Provides: R-codetools = 0.2.8 +Provides: R-boot = 1.3.13 +Provides: R-class = 7.3.11 +Provides: R-cluster = 1.15.3 +Provides: R-codetools = 0.2.9 Provides: R-compiler = %{version} Provides: R-datasets = %{version} Provides: R-foreign = 0.8.61 @@ -101,8 +101,8 @@ Provides: R-grid = %{version} Provides: R-lattice = 0.20.29 Provides: R-methods = %{version} -Provides: R-mgcv = 1.8.0 -Provides: R-nlme = 3.1.117 +Provides: R-mgcv = 1.8.3 +Provides: R-nlme = 3.1.118 Provides: R-nnet = 7.3.8 Provides: R-parallel = %{version} Provides: R-rpart = 4.1.8 ++++++ R-3.1.1.tar.bz2 -> R-3.1.2.tar.bz2 ++++++ /work/SRC/openSUSE:Factory/R-base/R-3.1.1.tar.bz2 /work/SRC/openSUSE:Factory/.R-base.new/R-3.1.2.tar.bz2 differ: char 11, line 1 -- To unsubscribe, e-mail: opensuse-commit+unsubscr...@opensuse.org For additional commands, e-mail: opensuse-commit+h...@opensuse.org
