Hello community,
here is the log from the commit of package hdf5 for openSUSE:Factory checked in
at 2015-07-25 07:43:29
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/hdf5 (Old)
and /work/SRC/openSUSE:Factory/.hdf5.new (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "hdf5"
Changes:
--------
--- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes 2015-05-20
23:44:46.000000000 +0200
+++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2015-07-25
07:43:30.000000000 +0200
@@ -1,0 +2,94 @@
+Thu Jul 23 11:30:56 UTC 2015 - toddrme2...@gmail.com
+
+- Fix baselibs.conf
+
+-------------------------------------------------------------------
+Wed Jul 22 11:23:14 UTC 2015 - toddrme2...@gmail.com
+
+- update to 1.8.15
+ * New Features
+ + Library
+ - Added Memory Allocation Functions that Use the Library's Allocator
+ - H5Pset_istore_k and H5Pset_sym_k added validation of "ik" to not
+ exceed the max v1 btree entries (2 bytes) to these two routines.
+ - Added Functions to Control the Value of H5PL_no_plugin_g without
+ Using an Environment Variable
+ + Parallel Library
+ - Attached an attribute destroy callback to MPI_COMM_SELF that
+ shuts down the HDF5 library when MPI_COMM_SELF is destroyed,
+ in other words, on MPI_Finalize. This should fix several issues
+ that users see when they forget to close HDF5 objects before
+ + Fortran API
+ - Added Global Variables. These new global variables are equivalent to
+ the C definitions without the '_F':
+ o H5G_UDLINK_F
+ o H5G_SAME_LOC_F
+ o H5O_TYPE_UNKNOWN_F
+ o H5O_TYPE_GROUP_F
+ o H5O_TYPE_DATASET_F
+ o H5O_NAMED_DATATYPE_F
+ o H5O_TYPE_NTYPES_F
+ + C++ API
+ - New Wrappers for C Functions H5P[s/g]et_libver_bounds
+ - New Wrappers to Get the Object Header's Version
+ - New DataType Constructor
+ + Support for New Platforms, Languages, and Compilers
+ - Support for Linux 3.10.0-123.20.1.el7 added (LK - 2015/04/01)
+ * Bug Fixes since HDF5-1.8.14
+ + Library
+ - Addition of Error Tracing Functionality to Several C API Calls
+ - H5Rdereference Now Checks for HADDR_UNDEF or Uninitialized References
+ - Fixed Bugs in H5Sextent_copy
+ + Parallel Library
+ - Fixed a Potential Memory Error
+ - Parallel Test Problem Fixed
+ - MPE Support
+ + Tools
+ - h5repack crashed on enumerated 8-bit type.
+ - h52gif crashed non-8bit images.
+ - perform/benchpar.c retired.
+ - Source perform/ directory moved to tools/perform.
+ + Fortran API
+ - Fortran Fails with --enable-fortran2003 and Intel 15.x Compilers
+ - h5tenum_insert_f Does Not Work with Default 8 Byte Integers
+ (xlf compiler)
+ - Some Fortran APIs Never Returned the Error State
+ - Fixed h5pget_class_f
+ + C++ API
+ - Combined Two H5File::getObjCount Overloaded Methods
+ The following two methods
+ o ssize_t getObjCount(unsigned types) const;
+ o ssize_t getObjCount() const;
+ were combined into one:
+ o ssize_t getObjCount(unsigned types = H5F_OBJ_ALL) const;
+ - Many Warnings Were Removed
+ - Functionality Deprecation
+ The following two constructors of classes AbstractDs, IdComponent,
+ H5Location, and H5Object are no longer appropriate after the data
member
+ "id" had been moved from IdComponent to the sub-classes in previous
+ releases.
+ o <Classname>(const hid_t h5_id);
+ o <Classname>(const <Classname>& original);
+ The copy constructors were no-op and removed in 1.8.15. The other
+ constructors will be removed from 1.10 release, and then from 1.8.17
+ if their removal does not cause any problems.
+ + High-Level APIs:
+ - Suppress Warnings from Flex/Bison-generated Code
+ - Changed hdf5_hl.h to Include the HDF5 Main Library "hdf5.h"
+ - H5PTcreate_fl Does Not Convert to Memory Datatype
+ - Fix for H5LT Attribute Functions
+ + Fortran High-Level APIs:
+ - Internal Library Fix for Missing Argument Declaration
+- Build in thread-safe mode to allow parallel reads
+ * These are only unsupported to avoid confusing casual users.
+ The fotran and C++ libraries don't support thread-safe mode,
+ while the C library does. So you have to explicitly allow
+ building the thread-safe C library and the non-thread-safe C++
+ and fortran libraries in order to make sure only people who
+ have done their research do so. Since users are going to be
+ accessing this through other programs, this doesn't matter.
+- Build fortran 2003 libraries
+- Rebase hdf5-non_void_return.patch
+- Remove irrelevant hdf5-configure-long-double.patch
+
+-------------------------------------------------------------------
Old:
----
hdf5-1.8.14.tar.bz2
hdf5-configure-long-double.patch
New:
----
hdf5-1.8.15.tar.bz2
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ hdf5.spec ++++++
--- /var/tmp/diff_new_pack.YNzyKp/_old 2015-07-25 07:43:31.000000000 +0200
+++ /var/tmp/diff_new_pack.YNzyKp/_new 2015-07-25 07:43:31.000000000 +0200
@@ -16,7 +16,7 @@
#
-%define hdf5_libver 9
+%define hdf5_libver 10
%define libname libhdf5
%if 0%{?sles_version}
@@ -29,7 +29,7 @@
%define _mpi %{?_openmpi:openmpi} %{?_mvapich2:mvapich2}
Name: hdf5
-Version: 1.8.14
+Version: 1.8.15
Release: 0
Summary: A general purpose library and file format for storing
scientific data
License: BSD-3-Clause
@@ -44,8 +44,7 @@
%ifarch %arm
Patch4: hdf5-1.8.10-tests-arm.patch
%endif
-Patch5: hdf5-configure-long-double.patch
-Patch6: hdf5-ldouble-ppc64le.patch
+Patch5: hdf5-ldouble-ppc64le.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: gcc-c++
%if 0%{?suse_version} > 1140
@@ -285,7 +284,6 @@
%patch4 -p0 -b .tests-arm
%endif
%patch5 -p1
-%patch6 -p1
echo "prepare parallel builds: %_mpi"
for build_dir in build %_mpi; do
@@ -306,16 +304,29 @@
test -e config/linux-gnueabi || cp config/linux-gnu config/linux-gnueabi
%endif
+# NOTE: --enable-unsupported is required when --enable-fortran
+# and/or --enable-cxx is enabled along with --enable-threadsafe.
+# Building with thise combination results in thread-safe C
+# libraries and non-thread-safe fotran and/or C++ libraries. So
+# you have to explicitly allow building the thread-safe C
+# library and the non-thread-safe C++ and fortran libraries in
+# order to make sure people don't assume that their fotran or
+# C++ code is thread-safe. Since our users are going to be
+# accessing this through other programs, this doesn't matter.
+
pushd build
%configure \
--docdir=%{_docdir}/%{name} \
--disable-dependency-tracking \
%if 0%{?suse_version} > 1140
--enable-fortran \
+ --enable-fortran2003 \
%endif
+ --enable-unsupported \
--enable-hl \
--enable-shared \
--enable-cxx \
+ --enable-threadsafe \
--with-pthread
make V=1 %{?_smp_mflags}
@@ -339,9 +350,12 @@
--disable-dependency-tracking \
%if 0%{?suse_version} > 1140
--enable-fortran \
+ --enable-fortran2003 \
%endif
+ --enable-unsupported \
--enable-hl \
--enable-shared \
+ --enable-threadsafe \
--enable-parallel \
--with-pthread
++++++ baselibs.conf ++++++
--- /var/tmp/diff_new_pack.YNzyKp/_old 2015-07-25 07:43:31.000000000 +0200
+++ /var/tmp/diff_new_pack.YNzyKp/_new 2015-07-25 07:43:31.000000000 +0200
@@ -1,18 +1,18 @@
-libhdf5-9
+libhdf5-10
hdf5-devel
requires -<targettype>
- requires "libhdf5-9-<targettype> = <version>"
- requires "libhdf5_hl9-<targettype> = <version>"
-libhdf5-9-openmpi
+ requires "libhdf5-10-<targettype> = <version>"
+ requires "libhdf5_hl10-<targettype> = <version>"
+libhdf5-10-openmpi
hdf5-openmpi-devel
requires -openmpi-<targettype>
- requires "libhdf5-9-openmpi-<targettype> = <version>"
- requires "libhdf5_hl9-openmpi-<targettype> = <version>"
-libhdf5-9-mvapich2
-libhdf5_hl9
-libhdf5_hl9-mvapich2
-libhdf5_hl9-openmpi
+ requires "libhdf5-10-openmpi-<targettype> = <version>"
+ requires "libhdf5_hl10-openmpi-<targettype> = <version>"
+libhdf5-10-mvapich2
+libhdf5_hl10
+libhdf5_hl10-mvapich2
+libhdf5_hl10-openmpi
hdf5-mvapich2-devel
requires -openmpi-<targettype>
- requires "libhdf5-9-mvapich2-<targettype> = <version>"
- requires "libhdf5_hl9-mvapich2-<targettype> = <version>"
+ requires "libhdf5-10-mvapich2-<targettype> = <version>"
+ requires "libhdf5_hl10-mvapich2-<targettype> = <version>"
++++++ hdf5-1.8.14.tar.bz2 -> hdf5-1.8.15.tar.bz2 ++++++
/work/SRC/openSUSE:Factory/hdf5/hdf5-1.8.14.tar.bz2
/work/SRC/openSUSE:Factory/.hdf5.new/hdf5-1.8.15.tar.bz2 differ: char 11, line 1
++++++ hdf5-non_void_return.patch ++++++
--- /var/tmp/diff_new_pack.YNzyKp/_old 2015-07-25 07:43:31.000000000 +0200
+++ /var/tmp/diff_new_pack.YNzyKp/_new 2015-07-25 07:43:31.000000000 +0200
@@ -49,19 +49,6 @@
leave(int ret)
{
if (fname_src)
-Index: tools/h5repack/h5repack_main.c
-===================================================================
---- tools/h5repack/h5repack_main.c.orig
-+++ tools/h5repack/h5repack_main.c
-@@ -21,7 +21,7 @@
- #define PROGRAMNAME "h5repack"
-
- static int parse_command_line(int argc, const char **argv, pack_opt_t*
options);
--static void leave(int ret);
-+static void leave(int ret) __attribute__((__noreturn__));
-
-
- /* module-scoped variables */
Index: tools/misc/h5mkgrp.c
===================================================================
--- tools/misc/h5mkgrp.c.orig
