Hello community, here is the log from the commit of package hdf5 for openSUSE:Factory checked in at 2016-08-03 11:39:33 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Comparing /work/SRC/openSUSE:Factory/hdf5 (Old) and /work/SRC/openSUSE:Factory/.hdf5.new (New) ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "hdf5" Changes: -------- --- /work/SRC/openSUSE:Factory/hdf5/hdf5.changes 2016-06-03 16:35:10.000000000 +0200 +++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2016-08-03 11:39:34.000000000 +0200 @@ -1,0 +2,6 @@ +Tue Jul 26 15:50:22 UTC 2016 - [email protected] + +- update to 1.10.0-patch1 + https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0-patch1/src/hdf5-1.10.0-patch1-RELEASE.txt + +------------------------------------------------------------------- Old: ---- hdf5-1.8.17.tar.bz2 New: ---- hdf5-1.10.0-patch1.tar.bz2 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ ++++++ hdf5.spec ++++++ --- /var/tmp/diff_new_pack.HiDHPU/_old 2016-08-03 11:39:36.000000000 +0200 +++ /var/tmp/diff_new_pack.HiDHPU/_new 2016-08-03 11:39:36.000000000 +0200 @@ -27,22 +27,24 @@ # TODO: The so numbers autodetected by update_so_version.sh # do not match the so numbers that are actually buit. -%define sonum 10 -%define sonum_CXX 12 -%define sonum_F 10 -%define sonum_HL 10 -%define sonum_HL_CXX 11 -%define sonum_HL_F 10 -%define sonum_TOOLS 10 +%define sonum 100 +%define sonum_CXX 100 +%define sonum_F 100 +%define sonum_HL 100 +%define sonum_HL_CXX 100 +%define sonum_HL_F 100 +%define sonum_TOOLS 100 Name: hdf5 -Version: 1.8.17 +Version: 1.10.0 Release: 0 +%define short_ver 1.10 +%define src_ver %{version}-patch1 Summary: Command-line programs for the HDF5 scientific data format License: BSD-3-Clause Group: Productivity/Scientific/Other Url: http://www.hdfgroup.org/HDF5/ -Source0: http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%{version}/src/hdf5-%{version}.tar.bz2 +Source0: http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%{short_ver}/hdf5-%{src_ver}/src/hdf5-%{src_ver}.tar.bz2 Source1000: baselibs.conf Source1001: baselibs.conf.in Source1002: update_so_version.sh @@ -765,7 +767,7 @@ This package provides examples of HDF5 library use. %prep -%setup -q +%setup -q -n %name-%version-patch1 %patch0 -p1 -b .LD_LIBRARY_PATH %patch1 -p0 -b .non_void_return %patch2 -p0 -b .abort_unknown_host_config @@ -816,7 +818,7 @@ --enable-shared \ --enable-cxx \ --enable-threadsafe \ - --enable-production \ + --enable-build-mode=production \ --with-pthread make V=1 %{?_smp_mflags} @@ -845,7 +847,7 @@ --enable-shared \ --enable-threadsafe \ --enable-parallel \ - --enable-production \ + --enable-build-mode=production \ --with-pthread make %{?_smp_mflags} @@ -940,10 +942,12 @@ %defattr(-,root,root) %{_bindir}/gif2h5 %{_bindir}/h52gif +%{_bindir}/h5clear %{_bindir}/h5copy %{_bindir}/h5debug %{_bindir}/h5diff %{_bindir}/h5dump +%{_bindir}/h5format_convert %{_bindir}/h5import %{_bindir}/h5jam %{_bindir}/h5ls @@ -954,12 +958,12 @@ %{_bindir}/h5repart %{_bindir}/h5stat %{_bindir}/h5unjam +%{_bindir}/h5watch %files -n libhdf5-%{sonum} %defattr(-,root,root) %doc COPYING ACKNOWLEDGMENTS README.txt -%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt -%doc release_docs/HISTORY-1_8.txt +%doc release_docs/HISTORY-1_8_0-1_10_0.txt %doc release_docs/RELEASE.txt %defattr(0755,root,root) %{_libdir}/libhdf5.so.%{sonum} @@ -1006,6 +1010,9 @@ %files devel %defattr(-,root,root) +%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt +%doc release_docs/RELEASE.txt +%doc ACKNOWLEDGMENTS README.txt %{_bindir}/h5c++ %{_bindir}/h5cc %{_bindir}/h5fc @@ -1027,10 +1034,12 @@ %defattr(-,root,root) %{_libdir}/mpi/gcc/openmpi/bin/gif2h5 %{_libdir}/mpi/gcc/openmpi/bin/h52gif +%{_libdir}/mpi/gcc/openmpi/bin/h5clear %{_libdir}/mpi/gcc/openmpi/bin/h5copy %{_libdir}/mpi/gcc/openmpi/bin/h5debug %{_libdir}/mpi/gcc/openmpi/bin/h5diff %{_libdir}/mpi/gcc/openmpi/bin/h5dump +%{_libdir}/mpi/gcc/openmpi/bin/h5format_convert %{_libdir}/mpi/gcc/openmpi/bin/h5import %{_libdir}/mpi/gcc/openmpi/bin/h5jam %{_libdir}/mpi/gcc/openmpi/bin/h5ls @@ -1043,13 +1052,11 @@ %{_libdir}/mpi/gcc/openmpi/bin/h5stat %{_libdir}/mpi/gcc/openmpi/bin/h5unjam %{_libdir}/mpi/gcc/openmpi/bin/ph5diff +%{_libdir}/mpi/gcc/openmpi/bin/h5watch %files -n libhdf5-%{sonum}-openmpi %defattr(-,root,root) %doc COPYING ACKNOWLEDGMENTS README.txt -%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt -%doc release_docs/HISTORY-1_8.txt -%doc release_docs/RELEASE.txt %defattr(0755,root,root) %{_libdir}/mpi/gcc/openmpi/%{_lib}/libhdf5.so.%{sonum} %{_libdir}/mpi/gcc/openmpi/%{_lib}/libhdf5.so.%{sonum}.* @@ -1113,10 +1120,7 @@ %files -n libhdf5-%{sonum}-mvapich2 %defattr(-,root,root) -%doc COPYING ACKNOWLEDGMENTS README.txt -%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt -%doc release_docs/HISTORY-1_8.txt -%doc release_docs/RELEASE.txt +%doc COPYING %defattr(0755,root,root) %{_libdir}/mpi/gcc/mvapich2/%{_lib}/libhdf5.so.%{sonum} %{_libdir}/mpi/gcc/mvapich2/%{_lib}/libhdf5.so.%{sonum}.* ++++++ baselibs.conf ++++++ --- /var/tmp/diff_new_pack.HiDHPU/_old 2016-08-03 11:39:36.000000000 +0200 +++ /var/tmp/diff_new_pack.HiDHPU/_new 2016-08-03 11:39:36.000000000 +0200 @@ -1,17 +1,17 @@ -libhdf5-10 -libhdf5-10-openmpi -libhdf5-10-mvapich2 -libhdf5_hl10 -libhdf5_hl10-mvapich2 -libhdf5_hl10-openmpi -libhdf5_cpp12 -libhdf5_hl_cpp11 -libhdf5_fortran10 -libhdf5_fortran10-openmpi -libhdf5_fortran10-mvapich2 -libhdf5hl_fortran10 -libhdf5hl_fortran10-mvapich2 -libhdf5hl_fortran10-openmpi +libhdf5-100 +libhdf5-100-openmpi +libhdf5-100-mvapich2 +libhdf5_hl100 +libhdf5_hl100-mvapich2 +libhdf5_hl100-openmpi +libhdf5_cpp100 +libhdf5_hl_cpp100 +libhdf5_fortran100 +libhdf5_fortran100-openmpi +libhdf5_fortran100-mvapich2 +libhdf5hl_fortran100 +libhdf5hl_fortran100-mvapich2 +libhdf5hl_fortran100-openmpi hdf5-devel requires -<targettype> requires "libhdf5-10-<targettype> = <version>" ++++++ hdf5-1.8.11-abort_unknown_host_config.patch ++++++ --- /var/tmp/diff_new_pack.HiDHPU/_old 2016-08-03 11:39:36.000000000 +0200 +++ /var/tmp/diff_new_pack.HiDHPU/_new 2016-08-03 11:39:36.000000000 +0200 @@ -2,7 +2,7 @@ =================================================================== --- configure.orig +++ configure -@@ -4214,6 +4214,8 @@ done +@@ -4085,6 +4085,8 @@ done if test "X$host_config" != "Xnone"; then CC_BASENAME="`echo $CC | cut -f1 -d' ' | xargs basename 2>/dev/null`" . $host_config @@ -15,7 +15,7 @@ =================================================================== --- configure.ac.orig +++ configure.ac -@@ -305,6 +305,8 @@ done +@@ -266,6 +266,8 @@ done if test "X$host_config" != "Xnone"; then CC_BASENAME="`echo $CC | cut -f1 -d' ' | xargs basename 2>/dev/null`" . $host_config ++++++ hdf5-LD_LIBRARY_PATH.patch ++++++ --- /var/tmp/diff_new_pack.HiDHPU/_old 2016-08-03 11:39:36.000000000 +0200 +++ /var/tmp/diff_new_pack.HiDHPU/_new 2016-08-03 11:39:36.000000000 +0200 @@ -1,8 +1,8 @@ -Index: hdf5-1.8.14/src/Makefile.in +Index: hdf5-1.10.0-patch1/src/Makefile.in =================================================================== ---- hdf5-1.8.14.orig/src/Makefile.in -+++ hdf5-1.8.14/src/Makefile.in -@@ -1667,8 +1667,6 @@ help: +--- hdf5-1.10.0-patch1.orig/src/Makefile.in ++++ hdf5-1.10.0-patch1/src/Makefile.in +@@ -1847,8 +1847,6 @@ help: # Remove the generated .c file if errors occur unless HDF5_Make_Ignore # is set to ignore the error. H5Tinit.c: H5detect$(EXEEXT) @@ -11,7 +11,7 @@ $(RUNSERIAL) ./H5detect$(EXEEXT) > $@ || \ (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ ($(RM) $@ ; exit 1) -@@ -1679,8 +1677,6 @@ H5Tinit.c: H5detect$(EXEEXT) +@@ -1859,8 +1857,6 @@ H5Tinit.c: H5detect$(EXEEXT) # Remove the generated .c file if errors occur unless HDF5_Make_Ignore # is set to ignore the error. H5lib_settings.c: H5make_libsettings$(EXEEXT) libhdf5.settings ++++++ hdf5-buildcompare.patch ++++++ --- /var/tmp/diff_new_pack.HiDHPU/_old 2016-08-03 11:39:36.000000000 +0200 +++ /var/tmp/diff_new_pack.HiDHPU/_new 2016-08-03 11:39:36.000000000 +0200 @@ -3,11 +3,11 @@ src/libhdf5.settings.in | 3 --- 2 files changed, 15 deletions(-) -Index: hdf5-1.8.15/src/H5detect.c +Index: hdf5-1.10.0-patch1/src/H5detect.c =================================================================== ---- hdf5-1.8.15.orig/src/H5detect.c -+++ hdf5-1.8.15/src/H5detect.c -@@ -1308,18 +1308,6 @@ bit.\n"; +--- hdf5-1.10.0-patch1.orig/src/H5detect.c ++++ hdf5-1.10.0-patch1/src/H5detect.c +@@ -1311,18 +1311,6 @@ bit.\n"; printf("/* Generated automatically by H5detect -- do not edit */\n\n\n"); HDputs(FileHeader); /*the copyright notice--see top of this file */ @@ -26,19 +26,18 @@ printf(" *\n * Purpose:\t\t"); for (s = purpose; *s; s++) { HDputchar(*s); -Index: hdf5-1.8.15/src/libhdf5.settings.in +Index: hdf5-1.10.0-patch1/src/libhdf5.settings.in =================================================================== ---- hdf5-1.8.15.orig/src/libhdf5.settings.in -+++ hdf5-1.8.15/src/libhdf5.settings.in -@@ -4,11 +4,8 @@ +--- hdf5-1.10.0-patch1.orig/src/libhdf5.settings.in ++++ hdf5-1.10.0-patch1/src/libhdf5.settings.in +@@ -4,10 +4,7 @@ General Information: ------------------- - HDF5 Version: @H5_VERSION@ -- Configured on: @CONFIG_DATE@ -- Configured by: @CONFIG_USER@ - Configure mode: @CONFIG_MODE@ - Host system: @host_cpu@-@host_vendor@-@host_os@ -- Uname information: @UNAME_INFO@ - Byte sex: @BYTESEX@ - Libraries: @STATIC_SHARED@ - Installation point: @prefix@ + HDF5 Version: @H5_VERSION@ +- Configured on: @CONFIG_DATE@ +- Configured by: @CONFIG_USER@ + Host system: @host_cpu@-@host_vendor@-@host_os@ +- Uname information: @UNAME_INFO@ + Byte sex: @BYTESEX@ + Installation point: @prefix@ + ++++++ hdf5-ldouble-ppc64le.patch ++++++ --- /var/tmp/diff_new_pack.HiDHPU/_old 2016-08-03 11:39:36.000000000 +0200 +++ /var/tmp/diff_new_pack.HiDHPU/_new 2016-08-03 11:39:36.000000000 +0200 @@ -1,7 +1,8 @@ -diff -rupN hdf5-1.8.16.orig/configure hdf5-1.8.16/configure ---- hdf5-1.8.16.orig/configure 2015-11-10 15:01:10.000000000 +0100 -+++ hdf5-1.8.16/configure 2016-01-28 13:44:58.136709651 +0100 -@@ -27347,6 +27347,14 @@ main () +Index: hdf5-1.10.0-patch1/configure +=================================================================== +--- hdf5-1.10.0-patch1.orig/configure ++++ hdf5-1.10.0-patch1/configure +@@ -30356,6 +30356,14 @@ main () unsigned char s2[8]; int ret = 1; @@ -16,7 +17,7 @@ if(sizeof(long double) == 16 && sizeof(long) == 8) { /*make sure the long double type has 16 bytes in size and * 11 bits of exponent. If it is, -@@ -27464,6 +27472,14 @@ main () +@@ -30473,6 +30481,14 @@ main () unsigned char s[16]; int flag=0, ret=1; @@ -31,15 +32,14 @@ /*Determine if long double has 16 byte in size, 11 bit exponent, and *the bias is 0x3ff */ if(sizeof(long double) == 16) { -diff -rupN hdf5-1.8.16.orig/configure.ac hdf5-1.8.16/configure.ac ---- hdf5-1.8.16.orig/configure.ac 2015-11-04 23:29:55.000000000 +0100 -+++ hdf5-1.8.16/configure.ac 2016-01-28 13:44:58.144709750 +0100 -@@ -2277,7 +2277,15 @@ else - unsigned char s[16]; +Index: hdf5-1.10.0-patch1/configure.ac +=================================================================== +--- hdf5-1.10.0-patch1.orig/configure.ac ++++ hdf5-1.10.0-patch1/configure.ac +@@ -2813,6 +2813,14 @@ else unsigned char s2[8]; int ret = 1; -- -+ + +#if defined __powerpc64__ && defined _LITTLE_ENDIAN + /* Don't bother checking on ppc64le, we know it'll work, and + that what hdf5 calls 'special algorithm' simply is @@ -49,13 +49,12 @@ +#endif + if(sizeof(long double) == 16 && sizeof(long) == 8) { - /*make sure the long double type has 16 bytes in size and + /*make sure the long double type has 16 bytes in size and * 11 bits of exponent. If it is, -@@ -2354,6 +2362,14 @@ else - unsigned long ull; - unsigned char s[16]; - int flag=0, ret=1; -+ +@@ -2973,6 +2981,14 @@ else + unsigned char s[16]; + int ret = 0; + +#if defined __powerpc64__ && defined _LITTLE_ENDIAN + /* Don't bother checking on ppc64le, we know it'll work, and + that what hdf5 calls 'special algorithm' simply is @@ -63,13 +62,15 @@ + The check below assumes big endian. */ + ret = 0; +#endif - - /*Determine if long double has 16 byte in size, 11 bit exponent, and - *the bias is 0x3ff */ -diff -rupN hdf5-1.8.16.orig/test/dt_arith.c hdf5-1.8.16/test/dt_arith.c ---- hdf5-1.8.16.orig/test/dt_arith.c 2015-10-24 07:13:43.000000000 +0200 -+++ hdf5-1.8.16/test/dt_arith.c 2016-01-28 13:44:58.153709861 +0100 -@@ -3010,7 +3010,18 @@ test_conv_flt_1 (const char *name, int r ++ + if(sizeof(long double) == 16) { + /*make sure the long double type is the same as the failing type + *which has 16 bytes in size and 11 bits of exponent. If it is, +Index: hdf5-1.10.0-patch1/test/dt_arith.c +=================================================================== +--- hdf5-1.10.0-patch1.orig/test/dt_arith.c ++++ hdf5-1.10.0-patch1/test/dt_arith.c +@@ -3049,7 +3049,18 @@ test_conv_flt_1 (const char *name, int r buf, saved, nelmts); #if H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE && H5_SIZEOF_LONG_DOUBLE!=0 } else if(src_type == FLT_LDOUBLE) { @@ -89,7 +90,7 @@ buf, saved, nelmts); #endif } else -@@ -3663,7 +3674,18 @@ test_conv_int_fp(const char *name, int r +@@ -3710,7 +3721,18 @@ test_conv_int_fp(const char *name, int r INIT_FP_DENORM(long double, LDBL_MANT_DIG, src_size, src_nbits, sendian, dst_size, buf, saved, nelmts); } else { ++++++ hdf5-non_void_return.patch ++++++ --- /var/tmp/diff_new_pack.HiDHPU/_old 2016-08-03 11:39:36.000000000 +0200 +++ /var/tmp/diff_new_pack.HiDHPU/_new 2016-08-03 11:39:36.000000000 +0200 @@ -2,7 +2,7 @@ =================================================================== --- test/dt_arith.c.orig +++ test/dt_arith.c -@@ -3497,6 +3497,7 @@ error: +@@ -3382,6 +3382,7 @@ error: else if(run_test==TEST_DENORM || run_test==TEST_SPECIAL) return 1; #endif @@ -14,7 +14,7 @@ =================================================================== --- tools/h5ls/h5ls.c.orig +++ tools/h5ls/h5ls.c -@@ -2528,7 +2528,7 @@ out: +@@ -2567,7 +2567,7 @@ out: * *------------------------------------------------------------------------- */ @@ -27,7 +27,7 @@ =================================================================== --- tools/h5dump/h5dump.c.orig +++ tools/h5dump/h5dump.c -@@ -208,7 +208,7 @@ static struct long_options l_opts[] = { +@@ -210,7 +210,7 @@ static struct long_options l_opts[] = { * *------------------------------------------------------------------------- */ @@ -77,7 +77,7 @@ =================================================================== --- tools/h5stat/h5stat.c.orig +++ tools/h5stat/h5stat.c -@@ -223,7 +223,7 @@ static struct long_options l_opts[] = { +@@ -250,7 +250,7 @@ static struct long_options l_opts[] = { { NULL, 0, '\0' } };
