Hi Leny, Our project - NDEx - at UCSD is using OrientDB for its backend data store of biological networks. (see www.ndexbio.org for background on what we are doing)
We were initially using OrientDB via tinker pop and SQL but we have eliminated tinker pop to simplify and streamline our access. The NDEx server provides a REST API designed for applications in which users store, share, and query graphs - supporting the biological research community. We are closely associated with the Cytoscape group (the main Cytoscape software is a desktop application for biological networks, in use in the scientific community for about 10 years) and the Bader lab at U Toronto where the cytoscape.js library is supported. I'm in the process of moving the NDEx web application's default visualization to use cytoscape.js in conduction with angular.js. Right now the NDEx pre-release web app is using a placeholder D3 displayer. D3 is very general and widely used, but cytoscape.js is focused on one of the kinds of graph visualizations and applications that we want to provide. All of our source code is freely available, but I'm afraid that it is not yet organized and would probably be pretty opaque for people outside our development team. :-( We will be releasing "v1.0" level code starting in September and we plan to provide tutorials and example code during Q4 (examples will include visualization) However, another project of the Ideker lab is currently in a more accessible state has some source code that may be helpful to you: http://idekerlab.github.io/cy-net-share/ CyNetShare also uses the cytoscape.js library and angular.js Dexter Dexter Pratt Director, NDEx project Ideker Lab UCSD / Cytoscape Consortium On Aug 5, 2014, at 8:37 AM, Leny Turmel <[email protected]> wrote: > HI Dexter, > > Thank you for your answer. I have never heard about this JS library. i am > going to take a look to Cytoscape right now. > > Did you personaly use Cytoscape? > Do you have any feedback about integrating OrientDB and Cytoscape? > > Thank you very much for your help. > Leny > > Le mardi 5 août 2014 17:29:36 UTC+2, Dexter Pratt a écrit : > Another one to consider is cytoscape.js > > Dexter > > On Aug 5, 2014, at 6:52 AM, Leny Turmel <[email protected]> wrote: > >> Hi all, >> >> I am searching for a solution to visualize dynamically an OrientDB graph in >> a web application. >> Because I want a dynamic visualization solution, I do want to a solution >> that implies to write and load a file (like GEXF files). >> I do not need to display huge graphs (so the performance is not the main >> criteria for me). >> >> On this post, I found the following solutions: >> sigmajs >> D3.js >> vivagraph.js >> >> Could you please help to choose the right solution? >> Did anyone already experiment one of them? >> Did anyone find a tutorial about a web visualization of ODB graphs? >> >> Any help will be very appreciated. >> Thank you >> Leny >> >> -- >> >> --- >> You received this message because you are subscribed to the Google Groups >> "OrientDB" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> For more options, visit https://groups.google.com/d/optout. > > > -- > > --- > You received this message because you are subscribed to the Google Groups > "OrientDB" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > For more options, visit https://groups.google.com/d/optout. -- --- You received this message because you are subscribed to the Google Groups "OrientDB" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. For more options, visit https://groups.google.com/d/optout.
