Hi Dexter, I'd be really interested to see how you are getting data from Orient over to Cytoscape (or d3) is there sample code or a tutorial somewhere?
On Tuesday, August 5, 2014 at 12:04:05 PM UTC-4, Dexter Pratt wrote: > > Hi Leny, > > Our project - NDEx - at UCSD is using OrientDB for its backend data store > of biological networks. (see www.ndexbio.org for background on what we > are doing) > > We were initially using OrientDB via tinker pop and SQL but we have > eliminated tinker pop to simplify and streamline our access. The NDEx > server provides a REST API designed for applications in which users store, > share, and query graphs - supporting the biological research community. > > We are closely associated with the Cytoscape group (the main Cytoscape > software is a desktop application for biological networks, in use in the > scientific community for about 10 years) and the Bader lab at U Toronto > where the cytoscape.js library is supported. > > I’m in the process of moving the NDEx web application's default > visualization to use cytoscape.js in conduction with angular.js. Right now > the NDEx pre-release web app is using a placeholder D3 displayer. D3 is > very general and widely used, but cytoscape.js is focused on one of the > kinds of graph visualizations and applications that we want to provide. > > All of our source code is freely available, but I’m afraid that it is not > yet organized and would probably be pretty opaque for people outside our > development team. :-( > > We will be releasing “v1.0” level code starting in September and we plan > to provide tutorials and example code during Q4 (examples will include > visualization) > > However, another project of the Ideker lab is currently in a more > accessible state has some source code that may be helpful to you: > http://idekerlab.github.io/cy-net-share/ > CyNetShare also uses the cytoscape.js library and angular.js > > Dexter > > Dexter Pratt > Director, NDEx project > Ideker Lab UCSD / Cytoscape Consortium > > > On Aug 5, 2014, at 8:37 AM, Leny Turmel <leny....@simsoft3d.fr > <javascript:>> wrote: > > HI Dexter, > > Thank you for your answer. I have never heard about this JS library. i am > going to take a look to Cytoscape right now. > > Did you personaly use Cytoscape? > Do you have any feedback about integrating OrientDB and Cytoscape? > > Thank you very much for your help. > Leny > > Le mardi 5 août 2014 17:29:36 UTC+2, Dexter Pratt a écrit : >> >> Another one to consider is cytoscape.js >> >> Dexter >> >> On Aug 5, 2014, at 6:52 AM, Leny Turmel <leny....@simsoft3d.fr> wrote: >> >> Hi all, >> >> I am searching for a solution to visualize dynamically an OrientDB graph >> in a web application. >> Because I want a dynamic visualization solution, I do want to a solution >> that implies to write and load a file (like GEXF files). >> I do not need to display huge graphs (so the performance is not the main >> criteria for me). >> >> On this post >> <http://stackoverflow.com/questions/21893401/interactive-and-dynamic-graph-visualization>, >> >> I found the following solutions: >> >> - sigmajs >> - D3.js >> - vivagraph.js >> >> >> Could you please help to choose the right solution? >> Did anyone already experiment one of them? >> Did anyone find a tutorial about a web visualization of ODB graphs? >> >> Any help will be very appreciated. >> Thank you >> Leny >> >> -- >> >> -- --- You received this message because you are subscribed to the Google Groups "OrientDB" group. To unsubscribe from this group and stop receiving emails from it, send an email to orient-database+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
