PBS that comes with OSCAR. sepbs is a script that launches my code using qsub to launch a script that includes pbsdsh.
Quite a circular path, but it appears to work. Is there also a way to assign a particular job to a particular node? Thanks, Ben Simmons Jeremy Enos wrote: > Ben- > Are you using PBSPro, or the PBS that comes with OSCAR? What does sepbs do? > > Jeremy > > At 07:19 AM 11/13/2002 -0600, Benjamin Simmons wrote: > >When I get 3 jobs running, I cannot add a 4th to the queue. It will not > >acknowledge it. I checked the maui config file, and it has a max number of > >jobs set to 8. I have copied the output of these commands below. > > > >Thanks again for all your help, > > > >Ben Simmons > > > > > >[bdsimmns@jupiter cluster]$ qstat > >Job id Name User Time Use S Queue > >---------------- ---------------- ---------------- -------- - ----- > >76.jupiter se_V3e-5_M1e-3 bdsimmns 09:31:59 R workq > >77.jupiter se_V3e-5_M2e-3 bdsimmns 09:32:05 R workq > > > > > >[bdsimmns@jupiter cluster]$ sepbs V3e-5_M3e-3 > >PBS: Now Executing SurfaceEvolver, case= V3e-5_M3e-3 > >82.jupiter.cfd.me.memphis.edu > >Script completed-Your job is running! > > > >[bdsimmns@jupiter cluster]$ qstat > >Job id Name User Time Use S Queue > >---------------- ---------------- ---------------- -------- - ----- > >76.jupiter se_V3e-5_M1e-3 bdsimmns 09:31:59 R workq > >77.jupiter se_V3e-5_M2e-3 bdsimmns 09:32:05 R workq > >82.jupiter se_V3e-5_M3e-3 bdsimmns 0 R workq > > > >[bdsimmns@jupiter cluster]$ sepbs V3e-5_M4e-3 > >PBS: Now Executing SurfaceEvolver, case= V3e-5_M4e-3 > >83.jupiter.cfd.me.memphis.edu > >Script completed-Your job is running! > > > >[bdsimmns@jupiter cluster]$ qstat > >Job id Name User Time Use S Queue > >---------------- ---------------- ---------------- -------- - ----- > >76.jupiter se_V3e-5_M1e-3 bdsimmns 09:31:59 R workq > >77.jupiter se_V3e-5_M2e-3 bdsimmns 09:32:05 R workq > >82.jupiter se_V3e-5_M3e-3 bdsimmns 0 R workq > > > >[bdsimmns@jupiter cluster]$ > > > > > >Bruce Becker wrote: > > > > > Hi Benjamin > > > > > > We have been using OSCAR software to set up our cluster here too. We could > > > never get the distribution of PBS that gets shipped with OSCAR to work > > > properly, so we went instead for PBSPro. Since we are an educational > > > insitution, we pay zero niks nada for it. You guys should investigate the > > > option as well, I think, because we've had a wonderfully easy time using > > > PBSPro. > > > > > > As for your current problem, I think the first place to start looking > > > would be your queue definition... try qmgr and do a print queue: > > > > > > becker@qgp3:/home/becker>qmgr > > > Max open servers: 4 > > > Qmgr: print queue workq > > > # > > > # Create queues and set their attributes. > > > # > > > # > > > # Create and define queue workq > > > # > > > create queue workq > > > set queue workq queue_type = Execution > > > set queue workq resources_available.ncpus = 20 > > > set queue workq max_user_run = 17 > > > set queue workq enabled = True > > > set queue workq started = True > > > > > > to see what the default is set to. The other easy way to debug is to use > > > xpbs to see the details of your queue. If you can submit more than one job > > > and see it run to completion, but get limited to a number of concurrent > > > jobs, then it sounds like it's the queue policy that's kicking in. Do the > > > other jobs you submit get queued at all ? ie - do you see a 'Q' state for > > > them, when you do a qstat ? > > > eg > > > > > > 524.qgp3 run_swim2a_msel steinber 05:38:03 R workq > > > 525.qgp3 run_swim2a_msel steinber 05:38:25 R workq > > > 526.qgp3 run_swim2a_msel steinber 05:38:03 R workq > > > 527.qgp3 run_swim2a_msel steinber 05:38:27 R workq > > > 528.qgp3 run_swim2a_msel steinber 0 Q workq > > > 529.qgp3 run_swim2a_msel steinber 0 Q workq > > > > > > hope I was of some help. good luck ! > > > > > > On Wed, 13 Nov 2002, Benjamin Simmons wrote: > > > > > > > I have installed and tested my first cluster using this tool. It is > > > > great!!!! > > > > > > > > When trying to run several jobs via PBS, I have only been able to get 3 > > > > jobs to be processes at one time. Is there a limit to the number of > > > > concurrent jobs that a single user can run? Is there a way to specify > > > > the nodes you desire a specific job to run on? > > > > > > > > Thanks, > > > > > > > > Benjamin Simmons > > > > The University of Memphis > > > > Mechanical Engineering Department > > > > > > > > > > > > > > > > ------------------------------------------------------- > > > > This sf.net email is sponsored by: Are you worried about > > > > your web server security? Click here for a FREE Thawte > > > > Apache SSL Guide and answer your Apache SSL security > > > > needs: http://www.gothawte.com/rd523.html > > > > _______________________________________________ > > > > Oscar-users mailing list > > > > [EMAIL PROTECTED] > > > > https://lists.sourceforge.net/lists/listinfo/oscar-users > > > > > > > > > > Bruce Becker, PhD student - Department of Physics > > > University of Cape Town > > > > > > Room 405, R.W. James Building, UCT > > > University Avenue North > > > Private Bag RONDEBOSCH > > > 7700 > > > > > > tel (w) +27 21 650 3356 > > > tel (m) +27 82 537 9425 > > > fax +27 21 650 3342 > > > > > > http://hep.phy.uct.ac.za/~becker > > > > > > > >------------------------------------------------------- > >This sf.net email is sponsored by: Are you worried about > >your web server security? Click here for a FREE Thawte > >Apache SSL Guide and answer your Apache SSL security > >needs: http://www.gothawte.com/rd523.html > >_______________________________________________ > >Oscar-users mailing list > >[EMAIL PROTECTED] > >https://lists.sourceforge.net/lists/listinfo/oscar-users > > ------------------------------------------------------- > This sf.net email is sponsored by: Are you worried about > your web server security? Click here for a FREE Thawte > Apache SSL Guide and answer your Apache SSL security > needs: http://www.gothawte.com/rd523.html > _______________________________________________ > Oscar-users mailing list > [EMAIL PROTECTED] > https://lists.sourceforge.net/lists/listinfo/oscar-users ------------------------------------------------------- This sf.net email is sponsored by: Are you worried about your web server security? 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