Thanks for the input Bernard and Michael.

I have a feeling the cluster will be used for Bioinformatics / 
datamining more than anything else, but I really can't say for sure. So 
I will definitely look into the link you posted.

Thanks,
James

Bernard Li wrote:
> Hi James:
>
> As you have guessed, "benchmark" really varies depending on what you are 
> trying to do.  The best benchmark is usually the application you will run the 
> most on your cluster - if you can't get your application to run favourably on 
> your cluster, then it doesn't really matter what linpack tells you your 
> cluster can compute.
>
> 3DMark is usually a benchmark used on PCs to determine how well its 3D 
> performance is, and is not usually used for benchmarking HPC clusters.  
> However, if you are into GPU clusters, then perhaps that's the benchmark for 
> you.
>
> I'd like to take this opportunity to plug Joe Landman's BBS, although the 
> name implies it's for "Bioinformatics" benchmarking, it can in fact plug in 
> different software packages outside the field of Bioinformatics (eg. CFD, oil 
> & gas, etc.):
>
> http://www.scalableinformatics.com/metadot/index.pl?id=2194
>
> Cheers,
>
> Bernard
>
>
> -----Original Message-----
> From: [EMAIL PROTECTED] on behalf of Otter
> Sent: Sat 16/09/2006 12:17
> To: [email protected]
> Subject: [Oscar-users] Cluster Benchmarks
>  
> Greetings,
>
> I am fairly new to cluster computing. I have constructed a cluster and 
> would like to
> benchmark it. I know the term benchmark is broad, but I do not know if 
> there are
> standards for cluster computing such as PCMark, 3DMark etc. I am working 
> with a group, so
> if my question seems to lack details it is because I do not know all of 
> the details. At
> the moment I just know we will need to generate some benchmarks as we 
> experiment with the
> cluster.
>
> I noticed a link to "A Portable Implementation of the High-Performance 
> Linpack Benchmark
> for Distributed-Memory Computers" on the OSCAR website (
> http://www.netlib.org/benchmark/hpl/ 
> <http://www.netlib.org/benchmark/hpl/> 
> ), but before I blindly selected a package I would
> like to ask for input from real cluster users. Are there certain 
> statistics that matter
> most? Is there a preferred benchmarking package? Is there a preferred 
> way to benchmark a
> cluster? I do understand that certain statistics are more meaningful 
> based on what type
> of cluster computing you are doing, but I would rather gather to many 
> statistics rather
> then to few. And I want my results to be as professional as possible.
>
> Thank you for any input,
> James
>
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Get stuff done quickly with pre-integrated technology to make your job easier
Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
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