Hi everyone,
I'm setting up a very small beowulf system (microwulf) for use at home
that uses OSCAR, but have run into a snag. Currently I have a head
computer that is a 32 bit i386 machine and two nodes that are 64bit
x86_64 dual core machines. I have installed the OSCAR software with few
problems and I can generate a i386 image, but the x86_64 image refuses
to build. I have checked and double checked my configuration and did
many searches on the net, but it doesn't appear that anyone has had a
similar problem like mine. The image build complains about missing
dependencies but when I search the distro directories it appears that
they are there. It is very strange because I don't see many packages
listed, just actual programs that it seems to be looking for. Also
where it complains about the versions being less then is needed isn't
correct either. When I check on the version they are greater then what
is requested. It's almost like the packages are not being processed in
the correct order. I have tried to change the order of the "Package
Repositories:" list, but it didn't have any effect. Any help would be
most appreciated. Thanks,
Jason]
Here is the log text:
--> Processing Dependency: lam-oscar for package: lam-oscar-modulefile
--> Finished Dependency Resolution
Error: Missing Dependency: /usr/X11R6/bin/mkfontdir is needed by package
fonts-xorg-base
Error: Missing Dependency: /bin/rm is needed by package
lam-switcher-modulefile
Error: Missing Dependency: /bin/rm is needed by package
openmpi-switcher-modulefile
Error: Missing Dependency: /bin/sh is needed by package
openmpi-switcher-modulefile
Error: Missing Dependency: bash >= 2.0 is needed by package gpm
Error: Missing Dependency: rsync >= 2.4.6 is needed by package
systemimager-client
Error: Missing Dependency: /bin/sh is needed by package ncurses
Error: Missing Dependency: modules-oscar is needed by package env-switcher
Error: Missing Dependency: /bin/bash is needed by package gpm
Error: Missing Dependency: modules-oscar is needed by package
modules-default-manpath-oscar
Error: Missing Dependency: glibc-headers is needed by package glibc-devel
Error: Missing Dependency: /bin/sh is needed by package ssh-oscar
Error: Missing Dependency: perl is needed by package systemimager-common
Error: Missing Dependency: /bin/sh is needed by package env-switcher
Error: Missing Dependency: /bin/sh is needed by package c3
Error: Missing Dependency: /bin/mkdir is needed by package
openmpi-switcher-modulefile
Error: Missing Dependency: /bin/chmod is needed by package
modules-default-manpath-oscar
Error: Missing Dependency: /bin/csh is needed by package ssh-oscar
Error: Missing Dependency: /bin/sh is needed by package xorg-x11-libs
Error: Missing Dependency: /bin/sh is needed by package glibc-devel
Error: Missing Dependency: /bin/bash is needed by package crontabs
Error: Missing Dependency: /usr/bin/env is needed by package c3-c3cmd-filter
Error: Missing Dependency: /bin/sh is needed by package tcl
Error: Missing Dependency: textutils is needed by package xorg-x11-libs
Error: Missing Dependency: /sbin/install-info is needed by package
glibc-devel
Error: Missing Dependency: perl(strict) is needed by package
perl-HTML-Tagset
Error: Missing Dependency: rsync is needed by package c3
Error: Missing Dependency: lam-oscar = 7.1.2 is needed by package
lam-switcher-modulefile
Error: Missing Dependency: modules-oscar is needed by package
openmpi-switcher-modulefile
Error: Missing Dependency: modules-oscar is needed by package
lam-oscar-modulefile
Error: Missing Dependency: /bin/chmod is needed by package
openmpi-switcher-modulefile
Error: Missing Dependency: rpm >= 3.0.5 is needed by package ssh-oscar
Error: Missing Dependency: torque = 2.0.0p8-3 is needed by package
torque-modulefile
Error: Missing Dependency: /bin/sh is needed by package
lam-switcher-modulefile
Error: Missing Dependency: /sbin/install-info is needed by package gpm
Error: Missing Dependency: /bin/bash is needed by package xinitrc
Error: Missing Dependency: /bin/mkdir is needed by package
lam-switcher-modulefile
Error: Missing Dependency: /bin/bash is needed by package switchdesk
Error: Missing Dependency: perl is needed by package systemimager-client
Error: Missing Dependency: modules-oscar is needed by package
lam-switcher-modulefile
Error: Missing Dependency: glibc-headers = 2.3.4-2.36 is needed by
package glibc-devel
Error: Missing Dependency: /bin/sed is needed by package
openmpi-switcher-modulefile
Error: Missing Dependency: /bin/chown is needed by package
lam-switcher-modulefile
Error: Missing Dependency: perl >= 0:5.00503 is needed by package
perl-HTML-Tagset
Error: Missing Dependency: /bin/sh is needed by package freetype
Error: Missing Dependency: /bin/mv is needed by package
lam-switcher-modulefile
Error: Missing Dependency: perl is needed by package systemconfigurator
Error: Missing Dependency: perl >= 1:5 is needed by package perl-HTML-Tagset
Error: Missing Dependency: modules-oscar >= 3.1 is needed by package
torque-modulefile
Error: Missing Dependency: /bin/sh is needed by package xorg-x11-Mesa-libGL
Error: Missing Dependency: /bin/sh is needed by package gpm
Error: Missing Dependency: perl is needed by package c3
Error: Missing Dependency: /bin/cat is needed by package
modules-default-manpath-oscar
Error: Missing Dependency: /sbin/pidof is needed by package xinitrc
Error: Missing Dependency: /bin/sed is needed by package
lam-switcher-modulefileError: Missing Dependency: /bin/chmod is needed
by package lam-switcher-modulefile
Error: Missing Dependency: chkfontpath is needed by package fonts-xorg-base
Error: Missing Dependency: which is needed by package xinitrc
Error: Missing Dependency: /usr/X11R6/bin/xsetroot is needed by package
xinitrc
Error: Missing Dependency: /bin/chown is needed by package
openmpi-switcher-modulefile
Error: Missing Dependency: /usr/bin/env is needed by package c3-ckillnode
Error: Missing Dependency: perl(vars) is needed by package perl-HTML-Tagset
Error: Missing Dependency: filesystem is needed by package basesystem
Error: Missing Dependency: /bin/sh is needed by package xinitrc
Error: Missing Dependency: /bin/cp is needed by package
modules-default-manpath-oscar
Error: Missing Dependency: /bin/sh is needed by package fonts-xorg-base
Error: Missing Dependency: grep is needed by package xorg-x11-libs
Error: Missing Dependency: perl is needed by package c3-c3cmd-filter
Error: Missing Dependency: /sbin/chkconfig is needed by package gpm
Error: Missing Dependency: /bin/mkdir is needed by package
modules-default-manpath-oscar
Error: Missing Dependency: /usr/X11R6/bin/sessreg is needed by package
xinitrc
Error: Missing Dependency: /bin/sh is needed by package fontconfig
Error: Missing Dependency: /bin/mv is needed by package
openmpi-switcher-modulefile
Error: Missing Dependency: lam-oscar is needed by package
lam-oscar-modulefile
Error: Missing Dependency: /bin/bash is needed by package yum
Error: Missing Dependency: glibc-common = 2.3.4-2.36 is needed by
package glibc
Error: Missing Dependency: python is needed by package yum
Error: Missing Dependency: /sbin/chkconfig is needed by package yum
Error: Missing Dependency: rpm >= 0:4.1.1 is needed by package yum
Error: Missing Dependency: python >= 2 is needed by package python2-compat
Error: Missing Dependency: coreutils is needed by package yum
Error: Missing Dependency: python-elementtree is needed by package yum
Error: Missing Dependency: /bin/sh is needed by package yum
Error: Missing Dependency: libxml2-python is needed by package yum
Error: Missing Dependency: yumconf is needed by package yum
Error: Missing Dependency: /usr/bin/python is needed by package yum
Error: Missing Dependency: perl is needed by package perl-AppConfig
Error: Missing Dependency: /sbin/service is needed by package yum
Error: Missing Dependency: rpm-python is needed by package yum
Error: Missing Dependency: python-sqlite is needed by package yum
Error: Missing Dependency: /usr/bin/python is needed by package
python-urlgrabber
ERROR while executing "yum -c /tmp/fileUIToEs --installroot
/var/lib/systemimager/images/gemongnodeimage -y install
4Suite.{x86_64,noarch} anacron.{x86_64,noarch} arpwatch.{x86_64,noarch}
ash.{x86_64,noarch} at.{x86_64,noarch} atk.{x86_64,noarch}
authconfig.{x86_64,noarch} basesystem.{x86_64,noarch}
bash.{x86_64,noarch} bc.{x86_64,noarch} beecrypt.{x86_64,noarch}
bind-utils.{x86_64,noarch} bind-libs.{x86_64,noarch}
binutils.{x86_64,noarch} bzip2.{x86_64,noarch}
bzip2-libs.{x86_64,noarch} chkconfig.{x86_64,noarch}
chkfontpath.{x86_64,noarch} cpio.{x86_64,noarch} cpp.{x86_64,noarch}
cracklib.{x86_64,noarch} cracklib-dicts.{x86_64,noarch}
crontabs.{x86_64,noarch} cyrus-sasl.{x86_64,noarch}
cyrus-sasl-md5.{x86_64,noarch} db4.{x86_64,noarch}
device-mapper.{x86_64,noarch} dhclient.{x86_64,noarch}
diffutils.{x86_64,noarch} dosfstools.{x86_64,noarch}
e2fsprogs.{x86_64,noarch} ed.{x86_64,noarch} ethtool.{x86_64,noarch}
eject.{x86_64,noarch} expat.{x86_64,noarch} file.{x86_64,noarch}
filesystem.{x86_64,noarch} findutils.{x86_64,noarch}
finger.{x86_64,noarch} finger-server.{x86_64,noarch}
freetype.{x86_64,noarch} ftp.{x86_64,noarch} gawk.{x86_64,noarch}
gcc.{x86_64,noarch} gcc-c++.{x86_64,noarch} gcc-g77.{x86_64,noarch}
gd.{x86_64,noarch} gdb.{x86_64,noarch} gdbm.{x86_64,noarch}
gettext.{x86_64,noarch} glib.{x86_64,noarch} glib2.{x86_64,noarch}
glibc.{x86_64,noarch} glibc-common.{x86_64,noarch}
glibc-devel.{x86_64,noarch} glibc-headers.{x86_64,noarch}
glibc-kernheaders.{x86_64,noarch} gmp.{x86_64,noarch}
gnuplot.{x86_64,noarch} gpm.{x86_64,noarch} grep.{x86_64,noarch}
groff.{x86_64,noarch} grub.{x86_64,noarch} gtk2.{x86_64,noarch}
gzip.{x86_64,noarch} hdparm.{x86_64,noarch} hotplug.{x86_64,noarch}
hwdata.{x86_64,noarch} info.{x86_64,noarch} initscripts.{x86_64,noarch}
iproute.{x86_64,noarch} iptables.{x86_64,noarch} iputils.{x86_64,noarch}
kernel.{x86_64,noarch} kernel-smp.{x86_64,noarch}
krb5-libs.{x86_64,noarch} less.{x86_64,noarch} libaio.{x86_64,noarch}
libaio-devel.{x86_64,noarch} libart_lgpl.{x86_64,noarch}
libjpeg.{x86_64,noarch} libpng.{x86_64,noarch}
libselinux.{x86_64,noarch} libsepol.{x86_64,noarch}
libstdc++.{x86_64,noarch} libstdc++-devel.{x86_64,noarch}
libtermcap.{x86_64,noarch} libuser.{x86_64,noarch}
logrotate.{x86_64,noarch} lsof.{x86_64,noarch} ltrace.{x86_64,noarch}
lvm2.{x86_64,noarch} m4.{x86_64,noarch} mailcap.{x86_64,noarch}
mailx.{x86_64,noarch} make.{x86_64,noarch} MAKEDEV.{x86_64,noarch}
man.{x86_64,noarch} man-pages.{x86_64,noarch} mingetty.{x86_64,noarch}
mkinitrd.{x86_64,noarch} mktemp.{x86_64,noarch}
module-init-tools.{x86_64,noarch} mtools.{x86_64,noarch}
ncurses.{x86_64,noarch} ntp.{x86_64,noarch} net-tools.{x86_64,noarch}
newt.{x86_64,noarch} nfs-utils.{x86_64,noarch} nscd.{x86_64,noarch}
ntsysv.{x86_64,noarch} openldap.{x86_64,noarch} openssh.{x86_64,noarch}
openssh-clients.{x86_64,noarch} openssh-server.{x86_64,noarch}
openssl.{x86_64,noarch} pam.{x86_64,noarch} pango.{x86_64,noarch}
passwd.{x86_64,noarch} patch.{x86_64,noarch} pciutils.{x86_64,noarch}
pcre.{x86_64,noarch} perl.{x86_64,noarch}
perl-HTML-Parser.{x86_64,noarch} perl-HTML-Tagset.{x86_64,noarch}
popt.{x86_64,noarch} portmap.{x86_64,noarch} postfix.{x86_64,noarch}
procmail.{x86_64,noarch} procps.{x86_64,noarch} psmisc.{x86_64,noarch}
python.{x86_64,noarch} PyXML.{x86_64,noarch} quota.{x86_64,noarch}
rdate.{x86_64,noarch} rdist.{x86_64,noarch} readline.{x86_64,noarch}
redhat-logos.{x86_64,noarch} rootfiles.{x86_64,noarch}
rpm.{x86_64,noarch} rpm-libs.{x86_64,noarch} rsh.{x86_64,noarch}
rsh-server.{x86_64,noarch} rsync.{x86_64,noarch} screen.{x86_64,noarch}
sed.{x86_64,noarch} setserial.{x86_64,noarch} setup.{x86_64,noarch}
setuptool.{x86_64,noarch} shadow-utils.{x86_64,noarch}
slang.{x86_64,noarch} slocate.{x86_64,noarch} strace.{x86_64,noarch}
switchdesk.{x86_64,noarch} sysklogd.{x86_64,noarch}
SysVinit.{x86_64,noarch} tar.{x86_64,noarch} tcl.{x86_64,noarch}
tcpdump.{x86_64,noarch} tcsh.{x86_64,noarch} telnet.{x86_64,noarch}
telnet-server.{x86_64,noarch} termcap.{x86_64,noarch}
coreutils.{x86_64,noarch} time.{x86_64,noarch} tmpwatch.{x86_64,noarch}
traceroute.{x86_64,noarch} udev.{x86_64,noarch} units.{x86_64,noarch}
usbutils.{x86_64,noarch} usermode.{x86_64,noarch}
utempter.{x86_64,noarch} util-linux.{x86_64,noarch}
vim-common.{x86_64,noarch} vim-minimal.{x86_64,noarch}
vixie-cron.{x86_64,noarch} which.{x86_64,noarch} jwhois.{x86_64,noarch}
words.{x86_64,noarch} xinetd.{x86_64,noarch} zlib.{x86_64,noarch}
zlib-devel.{x86_64,noarch} libcap.{x86_64,noarch} kbd.{x86_64,noarch}
libgcc.{x86_64,noarch} libacl.{x86_64,noarch} libf2c.{x86_64,noarch}
libattr.{x86_64,noarch} elfutils-libelf.{x86_64,noarch}
perl-Filter.{x86_64,noarch} libgcj.{x86_64,noarch}
fontconfig.{x86_64,noarch} hesiod.{x86_64,noarch} zip.{x86_64,noarch}
libobjc.{x86_64,noarch} libmng.{x86_64,noarch} libtiff.{x86_64,noarch}
rhpl.{x86_64,noarch} pyxf86config.{x86_64,noarch}
synaptics.{x86_64,noarch} tcp_wrappers.{x86_64,noarch}
ttmkfdir.{x86_64,noarch} tzdata.{x86_64,noarch} xinitrc.{x86_64,noarch}
xorg-x11-xfs.{x86_64,noarch} xorg-x11-tools.{x86_64,noarch}
xorg-x11-Mesa-libGL.{x86_64,noarch} xorg-x11-Mesa-libGLU.{x86_64,noarch}
xorg-x11-libs.{x86_64,noarch} fonts-xorg-base.{x86_64,noarch}
xorg-x11-xdm.{x86_64,noarch} xorg-x11-font-utils.{x86_64,noarch}
xorg-x11-xauth.{x86_64,noarch} xorg-x11-twm.{x86_64,noarch}
glibc.i686.{x86_64,noarch} tcl.i386 libstdc++.i386 freetype.i386
fontconfig.i386 glibc-devel.i386 xorg-x11-libs.i386 expat.i386
ncurses.i386 xorg-x11-Mesa-libGL.i386 zlib.i386 gpm.i386 libgcc.i386
c3.{x86_64,noarch} c3-c3cmd-filter.{x86_64,noarch}
c3-ckillnode.{x86_64,noarch} c3-profiled.{x86_64,noarch}
gcc-fortran.{x86_64,noarch} mpich-ch_p4-gcc-oscar.{x86_64,noarch}
mpich-ch_p4-gcc-oscar-module.{x86_64,noarch} torque.{x86_64,noarch}
torque-client.{x86_64,noarch} torque-modulefile.{x86_64,noarch}
torque-mom.{x86_64,noarch} nc.{x86_64,noarch} netcat.{x86_64,noarch}
systemconfigurator.{x86_64,noarch} systemimager-client.{x86_64,noarch}
systemimager-common.{x86_64,noarch} pvm.{x86_64,noarch}
pvm-modules-oscar.{x86_64,noarch} gcc-gfortran.{x86_64,noarch}
lam-oscar.{x86_64,noarch} lam-oscar-modulefile.{x86_64,noarch}
lam-switcher-modulefile.{x86_64,noarch} ganglia-gmond.{x86_64,noarch}
ssh-oscar.{x86_64,noarch} perl-Bit-Vector.{x86_64,noarch}
perl-Date-Calc.{x86_64,noarch} postfix-pflogsumm.{x86_64,noarch}
env-switcher.{x86_64,noarch}
modules-default-manpath-oscar.{x86_64,noarch}
modules-oscar.{x86_64,noarch} openmpi.{x86_64,noarch}
openmpi-switcher-modulefile.{x86_64,noarch} yume.{x86_64,noarch}" :
Illegal seek
PackMan smart_install failed. at
/usr/lib/systeminstaller/SystemInstaller/Package.pm line 219
Failed to install files. at /usr/bin/mksiimage line 184
FATAL: Can't remove /var/lib/systemimager/overrides/gemongnodeimage!
Package install failed
at /usr/bin/mksiimage line 190
at /usr/bin/mksiimage line 191
Image build finished.
Image gemongnodeimage does not exist
at /usr/bin/mksidisk line 88
Couldn't run command mksidisk -A --name gemongnodeimage --file
/opt/oscar-5.0/oscarsamples/sata.disk at
/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi/Tk.pm line 247
Requested images not found.
at /usr/bin/mksiimage line 292
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